Result of FASTA (ccds) for
pFN21AE2138
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2138, 129 aa
1>>>pF1KE2138 129 - 129 aa - 129 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6259+/-0.000736; mu= 14.4231+/- 0.045
mean_var=56.7729+/-11.394, 0's: 0 Z-trim(108.9): 38 B-trim: 372 in 2/48
Lambda= 0.170217
statistics sampled from 10470 (10513) to 10470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.323), width: 16
Scan time: 1.500
The best scores are: opt bits E(32554)
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 ( 129) 813 207.1 2.5e-54
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 ( 130) 796 202.9 4.5e-53
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 ( 130) 796 202.9 4.5e-53
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 ( 129) 790 201.4 1.3e-52
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 ( 130) 789 201.2 1.5e-52
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 ( 130) 789 201.2 1.5e-52
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 ( 130) 789 201.2 1.5e-52
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 ( 130) 789 201.2 1.5e-52
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 ( 130) 789 201.2 1.5e-52
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 ( 130) 789 201.2 1.5e-52
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 ( 130) 785 200.2 3e-52
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 ( 130) 785 200.2 3e-52
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 ( 128) 783 199.7 4.1e-52
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 ( 130) 782 199.5 4.9e-52
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 ( 130) 782 199.5 4.9e-52
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 ( 128) 780 199.0 6.8e-52
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 ( 130) 779 198.7 8.2e-52
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 ( 131) 773 197.3 2.3e-51
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 ( 143) 738 188.7 9.5e-49
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5 ( 369) 496 129.5 1.6e-30
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5 ( 371) 496 129.6 1.6e-30
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5 ( 372) 496 129.6 1.6e-30
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10 ( 372) 490 128.1 4.3e-30
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 ( 128) 463 121.1 1.9e-28
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 ( 128) 455 119.2 7.3e-28
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 ( 114) 413 108.8 8.4e-25
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 ( 102) 365 97.0 2.7e-21
CCDS35464.1 H2AFB3 gene_id:83740|Hs108|chrX ( 115) 300 81.1 1.9e-16
CCDS35461.1 H2AFB2 gene_id:474381|Hs108|chrX ( 115) 300 81.1 1.9e-16
CCDS35458.1 H2AFB1 gene_id:474382|Hs108|chrX ( 115) 291 78.8 8.9e-16
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7 ( 66) 241 66.4 2.8e-12
CCDS5498.1 H2AFV gene_id:94239|Hs108|chr7 ( 90) 228 63.3 3.3e-11
>>CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 (129 aa)
initn: 813 init1: 813 opt: 813 Z-score: 1088.8 bits: 207.1 E(32554): 2.5e-54
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESHKAKSK
:::::::::
CCDS93 TESHKAKSK
>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 (130 aa)
initn: 804 init1: 785 opt: 796 Z-score: 1066.2 bits: 202.9 E(32554): 4.5e-53
Smith-Waterman score: 796; 98.5% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS93 TESHHKAKGK
130
>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 (130 aa)
initn: 804 init1: 785 opt: 796 Z-score: 1066.2 bits: 202.9 E(32554): 4.5e-53
Smith-Waterman score: 796; 98.5% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS30 TESHHKAKGK
130
>>CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 (129 aa)
initn: 790 init1: 790 opt: 790 Z-score: 1058.3 bits: 201.4 E(32554): 1.3e-52
Smith-Waterman score: 790; 96.9% identity (100.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::.::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS31 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESHKAKSK
:::.:.:::
CCDS31 TESQKTKSK
>>CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 (130 aa)
initn: 797 init1: 778 opt: 789 Z-score: 1056.9 bits: 201.2 E(32554): 1.5e-52
Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS46 TESHHKAKGK
130
>>CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 (130 aa)
initn: 797 init1: 778 opt: 789 Z-score: 1056.9 bits: 201.2 E(32554): 1.5e-52
Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS46 TESHHKAKGK
130
>>CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 (130 aa)
initn: 797 init1: 778 opt: 789 Z-score: 1056.9 bits: 201.2 E(32554): 1.5e-52
Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS46 TESHHKAKGK
130
>>CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 (130 aa)
initn: 797 init1: 778 opt: 789 Z-score: 1056.9 bits: 201.2 E(32554): 1.5e-52
Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS45 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS45 TESHHKAKGK
130
>>CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 (130 aa)
initn: 797 init1: 778 opt: 789 Z-score: 1056.9 bits: 201.2 E(32554): 1.5e-52
Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS46 TESHHKAKGK
130
>>CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 (130 aa)
initn: 797 init1: 778 opt: 789 Z-score: 1056.9 bits: 201.2 E(32554): 1.5e-52
Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130)
10 20 30 40 50 60
pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
::::::::::::::::.::::::::::::::::::::::::::::::::::.::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
pF1KE2 TESH-KAKSK
:::: :::.:
CCDS46 TESHHKAKGK
130
129 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:55:54 2016 done: Sun Nov 6 18:55:54 2016
Total Scan time: 1.500 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]