FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2125, 328 aa
  1>>>pF1KE2125 328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5711+/-0.000363; mu= 6.5451+/- 0.023
 mean_var=162.1486+/-32.231, 0's: 0 Z-trim(118.5): 20  B-trim: 42 in 1/56
 Lambda= 0.100720
 statistics sampled from 31473 (31490) to 31473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.369), width:  16
 Scan time:  8.560

The best scores are:                                      opt bits E(85289)
NP_060354 (OMIM: 606505) PIN2/TERF1-interacting te ( 328) 2174 327.6 2.3e-89
NP_001271285 (OMIM: 606505) PIN2/TERF1-interacting ( 174)  906 143.1 4.1e-34


>>NP_060354 (OMIM: 606505) PIN2/TERF1-interacting telome  (328 aa)
 initn: 2174 init1: 2174 opt: 2174  Z-score: 1725.5  bits: 327.6 E(85289): 2.3e-89
Smith-Waterman score: 2174; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE2 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 YFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKK
              250       260       270       280       290       300

              310       320        
pF1KE2 KLQKPVEIAEDATLEETLVKKKKKKDSK
       ::::::::::::::::::::::::::::
NP_060 KLQKPVEIAEDATLEETLVKKKKKKDSK
              310       320        

>>NP_001271285 (OMIM: 606505) PIN2/TERF1-interacting tel  (174 aa)
 initn: 897 init1: 897 opt: 906  Z-score: 733.4  bits: 143.1 E(85289): 4.1e-34
Smith-Waterman score: 906; 93.2% identity (96.6% similar) in 146 aa overlap (1-144:1-146)

               10        20        30        40        50        60
pF1KE2 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
               70        80        90       100       110       120

              130         140       150       160       170        
pF1KE2 KNRVHYMKFTKGK--DLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTI
       ::::::::::::.  .: ::.. . :                                  
NP_001 KNRVHYMKFTKGRCQSLHSRGERNHDNQRLHHPGVLCQADGSTEEQAPGSSSRV      
              130       140       150       160       170          




328 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:46:57 2016 done: Mon Nov  7 15:46:58 2016
 Total Scan time:  8.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]