Result of FASTA (ccds) for
pFN21AE2100
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2100, 189 aa
1>>>pF1KE2100 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7355+/-0.000866; mu= 10.1746+/- 0.051
mean_var=63.2496+/-12.849, 0's: 0 Z-trim(105.8): 23 B-trim: 0 in 0/49
Lambda= 0.161267
statistics sampled from 8602 (8621) to 8602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.265), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1230 294.7 2.3e-80
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1182 283.5 5.2e-77
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1172 281.2 2.6e-76
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1149 275.8 1.1e-74
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1130 271.4 2.3e-73
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1101 264.7 2.5e-71
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1063 255.8 1.1e-68
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1054 253.7 4.8e-68
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1002 241.6 2.1e-64
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1002 241.6 2.1e-64
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 995 240.0 6.6e-64
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 990 238.8 1.5e-63
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 988 238.4 2e-63
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 704 172.3 1.6e-43
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 355 91.1 4.8e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 335 86.5 1.1e-17
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1230 init1: 1230 opt: 1230 Z-score: 1556.4 bits: 294.7 E(32554): 2.3e-80
Smith-Waterman score: 1230; 99.5% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
:::::::::
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 1496.0 bits: 283.5 E(32554): 5.2e-77
Smith-Waterman score: 1182; 96.3% identity (98.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
::: :::::
CCDS65 LQKILRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1172 init1: 1172 opt: 1172 Z-score: 1483.4 bits: 281.2 E(32554): 2.6e-76
Smith-Waterman score: 1172; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::.:::::: ::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
.:.:::::.::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::::::::::::::::::: :.:::::::::::::::::::::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
:::::::::
CCDS64 LQKRLRRKD
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1149 init1: 1149 opt: 1149 Z-score: 1454.5 bits: 275.8 E(32554): 1.1e-74
Smith-Waterman score: 1149; 94.2% identity (96.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
:: ::::::.:::::::::::::::::::::: ::::::::::::::: ::::::::.:
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::: ::::::::::::::: :::::::::::::::::::.:::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
:.: :::::
CCDS34 LKKGLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1165 init1: 1130 opt: 1130 Z-score: 1430.6 bits: 271.4 E(32554): 2.3e-73
Smith-Waterman score: 1130; 91.5% identity (97.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::: ::::::.::::::::::::::::::::::::::::::.:.:
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
.:.:::::.
CCDS64 FQERLRRKE
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1101 init1: 1101 opt: 1101 Z-score: 1394.2 bits: 264.7 E(32554): 2.5e-71
Smith-Waterman score: 1101; 88.4% identity (95.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.:::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::: ::::::: ::::::::::::::::::::: ::::::::::::::::::.:::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
::: :::::
CCDS34 LQKGLRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1078 init1: 1063 opt: 1063 Z-score: 1346.4 bits: 255.8 E(32554): 1.1e-68
Smith-Waterman score: 1063; 83.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
::: : ::::..::. ::::::::::::::::.:::.:...::::::: :::::::::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::.:::::::::::::::::::.::::.:...::.:: :::::::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::..::::::.::::: ::::.::::::::::::::::::::::::::::::::.:.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1335.1 bits: 253.7 E(32554): 4.8e-68
Smith-Waterman score: 1054; 83.6% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: ::::::::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
:::::::::::::::::::::::.:::::::::: :::::::::::::::::::::::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
:::::::::
CCDS65 LQKRLRRKD
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 1006 init1: 644 opt: 1002 Z-score: 1269.7 bits: 241.6 E(32554): 2.1e-64
Smith-Waterman score: 1002; 81.0% identity (93.1% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::::::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.::: :.::::...: :::::::: ::::::.::::::...::.:: :::::::::::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
::::: ::: :::::.:::::::::::::::::: :::::::::::::::::::.:.:::
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KE2 LQKRLRRKD
::. :: :.
CCDS65 LQESLRSKE
180
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 1017 init1: 1002 opt: 1002 Z-score: 1269.7 bits: 241.6 E(32554): 2.1e-64
Smith-Waterman score: 1002; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
::: :.::::..::: :: ::: ::::::::::.::...::::: ::: ::::::::::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
::.:::::.::::..:::::::.::::::::::.:::.::.. ::.:. :::::::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
:::.::: : :::::::::::::::::::::::::::::::::::::::::::.: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KE2 LQKRLRRKD
::.:::::.
CCDS65 LQERLRRKE
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:49:47 2016 done: Sun Nov 6 15:49:47 2016
Total Scan time: 1.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]