FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2054, 625 aa
  1>>>pF1KE2054 625 - 625 aa - 625 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5514+/-0.00123; mu= -3.3447+/- 0.073
 mean_var=371.6676+/-74.554, 0's: 0 Z-trim(111.1): 93  B-trim: 0 in 0/51
 Lambda= 0.066527
 statistics sampled from 12060 (12130) to 12060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.373), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS46557.1 TRAF3IP1 gene_id:26146|Hs108|chr2      ( 625) 4034 401.8 1.4e-111
CCDS33415.1 TRAF3IP1 gene_id:26146|Hs108|chr2      ( 691) 2296 235.0 2.5e-61


>>CCDS46557.1 TRAF3IP1 gene_id:26146|Hs108|chr2           (625 aa)
 initn: 4034 init1: 4034 opt: 4034  Z-score: 2116.7  bits: 401.8 E(32554): 1.4e-111
Smith-Waterman score: 4034; 100.0% identity (100.0% similar) in 625 aa overlap (1-625:1-625)

               10        20        30        40        50        60
pF1KE2 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 AEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEALQMDRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEALQMDRSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 SGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGLVKKILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGLVKKILE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 TKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 IQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQQDKICA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQQDKICA
              550       560       570       580       590       600

              610       620     
pF1KE2 VKANILKNEEKIQKMVYSINLTSRR
       :::::::::::::::::::::::::
CCDS46 VKANILKNEEKIQKMVYSINLTSRR
              610       620     

>>CCDS33415.1 TRAF3IP1 gene_id:26146|Hs108|chr2           (691 aa)
 initn: 2292 init1: 2292 opt: 2296  Z-score: 1214.6  bits: 235.0 E(32554): 2.5e-61
Smith-Waterman score: 3679; 90.0% identity (90.0% similar) in 657 aa overlap (1-591:1-657)

               10        20        30        40        50        60
pF1KE2 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KE2 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEG-----
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS33 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGRKEDN
              310       320       330       340       350       360

                                                                   
pF1KE2 ------------------------------------------------------------
                                                                   
CCDS33 ISAKSLDSIVSGINNEPNQETTTSEIGTKEANINSTSISDDNSASLRCENIQPNPTEKQK
              370       380       390       400       410       420

          360       370       380       390       400       410    
pF1KE2 -DSTSDAEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEAL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GDSTSDAEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEAL
              430       440       450       460       470       480

          420       430       440       450       460       470    
pF1KE2 QMDRSGSGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QMDRSGSGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGL
              490       500       510       520       530       540

          480       490       500       510       520       530    
pF1KE2 VKKILETKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VKKILETKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPL
              550       560       570       580       590       600

          540       550       560       570       580       590    
pF1KE2 GKIMDYIQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS33 GKIMDYIQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQ
              610       620       630       640       650       660

          600       610       620     
pF1KE2 QDKICAVKANILKNEEKIQKMVYSINLTSRR
                                      
CCDS33 QDKICAVKANILKNEEKIQKMVYSINLTSRR
              670       680       690 




625 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:04:30 2016 done: Sun Nov  6 12:04:31 2016
 Total Scan time:  4.090 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]