FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2050, 671 aa
  1>>>pF1KE2050 671 - 671 aa - 671 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2161+/-0.000913; mu= 7.2246+/- 0.055
 mean_var=147.0053+/-28.731, 0's: 0 Z-trim(110.7): 12  B-trim: 0 in 0/54
 Lambda= 0.105781
 statistics sampled from 11773 (11778) to 11773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.362), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(32554)
CCDS3506.1 SRP72 gene_id:6731|Hs108|chr4           ( 671) 4351 675.8 5.3e-194
CCDS58898.1 SRP72 gene_id:6731|Hs108|chr4          ( 610) 2578 405.2 1.4e-112


>>CCDS3506.1 SRP72 gene_id:6731|Hs108|chr4                (671 aa)
 initn: 4351 init1: 4351 opt: 4351  Z-score: 3596.4  bits: 675.8 E(32554): 5.3e-194
Smith-Waterman score: 4351; 100.0% identity (100.0% similar) in 671 aa overlap (1-671:1-671)

               10        20        30        40        50        60
pF1KE2 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ
              610       620       630       640       650       660

              670 
pF1KE2 QKKKKGGKGGW
       :::::::::::
CCDS35 QKKKKGGKGGW
              670 

>>CCDS58898.1 SRP72 gene_id:6731|Hs108|chr4               (610 aa)
 initn: 2578 init1: 2578 opt: 2578  Z-score: 2134.8  bits: 405.2 E(32554): 1.4e-112
Smith-Waterman score: 3840; 90.9% identity (90.9% similar) in 671 aa overlap (1-671:1-610)

               10        20        30        40        50        60
pF1KE2 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTDGTEEDPQAELAIIHGQMAYILQLQG
       :::::::::::::::::::::::::::::::::::                         
CCDS58 NTACALIGQGQLNQAMKILQKAEDLCRRSLSEDTD-------------------------
              190       200       210                              

              250       260       270       280       290       300
pF1KE2 RTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSK
                                           ::::::::::::::::::::::::
CCDS58 ------------------------------------QNVFDSKKKVKLTNAEGVEFKLSK
                                             220       230         

              310       320       330       340       350       360
pF1KE2 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIEL
     240       250       260       270       280       290         

              370       380       390       400       410       420
pF1KE2 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEE
     300       310       320       330       340       350         

              430       440       450       460       470       480
pF1KE2 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKD
     360       370       380       390       400       410         

              490       500       510       520       530       540
pF1KE2 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGD
     420       430       440       450       460       470         

              550       560       570       580       590       600
pF1KE2 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGK
     480       490       500       510       520       530         

              610       620       630       640       650       660
pF1KE2 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GTQGATAGASSELDASKTVSSPPTSPRPGSAATVSASTSNIIPPRHQKPAGAPATKKKQQ
     540       550       560       570       580       590         

              670 
pF1KE2 QKKKKGGKGGW
       :::::::::::
CCDS58 QKKKKGGKGGW
     600       610




671 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:30:04 2016 done: Sun Nov  6 17:30:05 2016
 Total Scan time:  3.600 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]