Result of FASTA (ccds) for
pFN21AE2048
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2048, 669 aa
1>>>pF1KE2048 669 - 669 aa - 669 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7292+/-0.00131; mu= -2.7989+/- 0.079
mean_var=408.3561+/-84.889, 0's: 0 Z-trim(110.4): 85 B-trim: 0 in 0/53
Lambda= 0.063468
statistics sampled from 11545 (11607) to 11545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.357), width: 16
Scan time: 4.190
The best scores are: opt bits E(32554)
CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 ( 669) 4342 412.5 9.5e-115
CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 ( 156) 979 103.9 1.8e-22
CCDS55775.1 RBM4 gene_id:100526737|Hs108|chr11 ( 118) 743 82.2 4.7e-16
CCDS55773.1 RBM14 gene_id:10432|Hs108|chr11 ( 119) 743 82.2 4.7e-16
CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 ( 339) 743 82.7 9.5e-16
>>CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11 (669 aa)
initn: 4342 init1: 4342 opt: 4342 Z-score: 2173.6 bits: 412.5 E(32554): 9.5e-115
Smith-Waterman score: 4342; 100.0% identity (100.0% similar) in 669 aa overlap (1-669:1-669)
10 20 30 40 50 60
pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 FSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAAS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 SLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 AASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAPYAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAPYAAQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQLNSYGAQASM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQLNSYGAQASM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 GLSGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GLSGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 RGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 RYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQ
610 620 630 640 650 660
pF1KE2 MHSGYQRRM
:::::::::
CCDS81 MHSGYQRRM
>>CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11 (156 aa)
initn: 979 init1: 979 opt: 979 Z-score: 517.1 bits: 103.9 E(32554): 1.8e-22
Smith-Waterman score: 979; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG
::::::::::::::::::::::::::::::
CCDS55 KEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV
130 140 150
>>CCDS55775.1 RBM4 gene_id:100526737|Hs108|chr11 (118 aa)
initn: 743 init1: 743 opt: 743 Z-score: 401.8 bits: 82.2 E(32554): 4.7e-16
Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGGMCVG
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG
>>CCDS55773.1 RBM14 gene_id:10432|Hs108|chr11 (119 aa)
initn: 743 init1: 743 opt: 743 Z-score: 401.7 bits: 82.2 E(32554): 4.7e-16
Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)
10 20 30 40 50 60
pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGMVPTGV
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG
>>CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11 (339 aa)
initn: 818 init1: 743 opt: 743 Z-score: 396.2 bits: 82.7 E(32554): 9.5e-16
Smith-Waterman score: 781; 50.5% identity (62.9% similar) in 321 aa overlap (1-319:1-280)
10 20 30 40 50 60
pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------
70 80 90 100 110
130 140 150 160 170
pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-GT
:::..:.:::. . .::.. ::: . : : . :
CCDS55 ------------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDR
120 130 140 150
180 190 200 210 220 230
pF1KE2 GGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYR
.: : : . .... :. .: : .: . : . .: : : : :
CCDS55 SGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRCR
160 170 180 190 200
240 250 260 270 280 290
pF1KE2 AQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAA
: : :: :. :.. ..: :.:: :: .: :.: .::
CCDS55 AARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAAA
210 220 230 240 250
300 310 320 330 340 350
pF1KE2 ASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGV
... . ..: .:.. : ::
CCDS55 TAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSL
260 270 280 290 300 310
669 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:32:16 2016 done: Sun Nov 6 20:32:17 2016
Total Scan time: 4.190 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]