FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2046, 664 aa
  1>>>pF1KE2046 664 - 664 aa - 664 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1804+/-0.00092; mu= 14.8337+/- 0.055
 mean_var=76.2941+/-15.017, 0's: 0 Z-trim(106.2): 23  B-trim: 0 in 0/48
 Lambda= 0.146835
 statistics sampled from 8849 (8864) to 8849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.272), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(32554)
CCDS8337.2 ALKBH8 gene_id:91801|Hs108|chr11        ( 664) 4487 960.3       0
CCDS73376.1 ALKBH8 gene_id:91801|Hs108|chr11       ( 667) 4487 960.3       0
CCDS47808.1 KIAA1456 gene_id:57604|Hs108|chr8      ( 454)  533 122.7 1.2e-27


>>CCDS8337.2 ALKBH8 gene_id:91801|Hs108|chr11             (664 aa)
 initn: 4487 init1: 4487 opt: 4487  Z-score: 5134.2  bits: 960.3 E(32554):    0
Smith-Waterman score: 4487; 100.0% identity (100.0% similar) in 664 aa overlap (1-664:1-664)

               10        20        30        40        50        60
pF1KE2 MDSNHQSNYKLSKTEKKFLRKQIKAKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MDSNHQSNYKLSKTEKKFLRKQIKAKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 YEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHID
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 THSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 THSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKETPPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKETPPSF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 PESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 LGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 RRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 LVEQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWHLKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LVEQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWHLKG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 NPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACRTVSDVRILQSYYDQGNWCVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACRTVSDVRILQSYYDQGNWCVI
              610       620       630       640       650       660

           
pF1KE2 LQKA
       ::::
CCDS83 LQKA
           

>>CCDS73376.1 ALKBH8 gene_id:91801|Hs108|chr11            (667 aa)
 initn: 4487 init1: 4487 opt: 4487  Z-score: 5134.2  bits: 960.3 E(32554):    0
Smith-Waterman score: 4487; 100.0% identity (100.0% similar) in 664 aa overlap (1-664:4-667)

                  10        20        30        40        50       
pF1KE2    MDSNHQSNYKLSKTEKKFLRKQIKAKHTLLRHEGIETVSYATQSLVVANGGLGNGVS
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MFAMDSNHQSNYKLSKTEKKFLRKQIKAKHTLLRHEGIETVSYATQSLVVANGGLGNGVS
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE2 RNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KE2 NFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVK
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KE2 HFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPA
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KE2 HIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCR
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KE2 KFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKETP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKETP
              310       320       330       340       350       360

       360       370       380       390       400       410       
pF1KE2 PSFPESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSFPESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGN
              370       380       390       400       410       420

       420       430       440       450       460       470       
pF1KE2 GKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFA
              430       440       450       460       470       480

       480       490       500       510       520       530       
pF1KE2 TAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSV
              490       500       510       520       530       540

       540       550       560       570       580       590       
pF1KE2 QRSLVEQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QRSLVEQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWH
              550       560       570       580       590       600

       600       610       620       630       640       650       
pF1KE2 LKGNPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACRTVSDVRILQSYYDQGNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LKGNPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACRTVSDVRILQSYYDQGNW
              610       620       630       640       650       660

       660    
pF1KE2 CVILQKA
       :::::::
CCDS73 CVILQKA
              

>>CCDS47808.1 KIAA1456 gene_id:57604|Hs108|chr8           (454 aa)
 initn: 724 init1: 524 opt: 533  Z-score: 610.1  bits: 122.7 E(32554): 1.2e-27
Smith-Waterman score: 533; 49.0% identity (77.8% similar) in 153 aa overlap (364-513:2-154)

           340       350       360       370       380       390   
pF1KE2 RKVRQTPCNCSYPLVCDSQRKETPPSFPESDKEASRLEQEYVHQVYEEIAGHFSSTRHTP
                                     :.::..::...::.:::  : .::. .   
CCDS47                              MDHEAAQLEKQHVHNVYESTAPYFSDLQSKA
                                            10        20        30 

           400       410       420       430       440       450   
pF1KE2 WPHIVEFLKALPSGSIVADIGCGNGKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCD
       ::.. .::.    ::..::::::.:::: .:.... .:::    ::.: :.:  .:.:::
CCDS47 WPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCD
              40        50        60        70        80        90 

           460       470       480       490       500          510
pF1KE2 ALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQE---Y
        : .: :. . :: :::.:::::.: .::. :..:..:.: :::. .::::::::.   .
CCDS47 NLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHF
             100       110       120       130       140       150 

              520       530       540       550       560       570
pF1KE2 NKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLVEQMRDMGSRDSASSVPRINDSQEGGCNS
       .::                                                         
CCDS47 EKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQCGSKR
             160       170       180       190       200       210 




664 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:00:04 2016 done: Sun Nov  6 15:00:05 2016
 Total Scan time:  3.590 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]