FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2016, 593 aa
  1>>>pF1KE2016 593 - 593 aa - 593 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7564+/-0.000737; mu= 18.0530+/- 0.045
 mean_var=83.9863+/-16.642, 0's: 0 Z-trim(111.0): 10  B-trim: 0 in 0/51
 Lambda= 0.139949
 statistics sampled from 12036 (12040) to 12036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.37), width:  16
 Scan time:  4.000

The best scores are:                                      opt bits E(32554)
CCDS45685.1 COASY gene_id:80347|Hs108|chr17        ( 593) 3902 797.5       0
CCDS11429.1 COASY gene_id:80347|Hs108|chr17        ( 564) 3696 755.8 3.2e-218
CCDS11493.1 DCAKD gene_id:79877|Hs108|chr17        ( 231)  331 76.2 5.2e-14


>>CCDS45685.1 COASY gene_id:80347|Hs108|chr17             (593 aa)
 initn: 3902 init1: 3902 opt: 3902  Z-score: 4255.7  bits: 797.5 E(32554):    0
Smith-Waterman score: 3902; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593)

               10        20        30        40        50        60
pF1KE2 MRTPRLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRTPRLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA
              490       500       510       520       530       540

              550       560       570       580       590   
pF1KE2 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD
              550       560       570       580       590   

>>CCDS11429.1 COASY gene_id:80347|Hs108|chr17             (564 aa)
 initn: 3696 init1: 3696 opt: 3696  Z-score: 4031.3  bits: 755.8 E(32554): 3.2e-218
Smith-Waterman score: 3696; 100.0% identity (100.0% similar) in 564 aa overlap (30-593:1-564)

               10        20        30        40        50        60
pF1KE2 MRTPRLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAAR
                                    :::::::::::::::::::::::::::::::
CCDS11                              MAVFRSGLLVLTTPLASLAPRLASILTSAAR
                                            10        20        30 

               70        80        90       100       110       120
pF1KE2 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVNHTLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIR
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KE2 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKSTFLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVL
             100       110       120       130       140       150 

              190       200       210       220       230       240
pF1KE2 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLL
             160       170       180       190       200       210 

              250       260       270       280       290       300
pF1KE2 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLD
             220       230       240       250       260       270 

              310       320       330       340       350       360
pF1KE2 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKV
             280       290       300       310       320       330 

              370       380       390       400       410       420
pF1KE2 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHL
             340       350       360       370       380       390 

              430       440       450       460       470       480
pF1KE2 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKL
             400       410       420       430       440       450 

              490       500       510       520       530       540
pF1KE2 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AREEMDRAVAEGKRVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAA
             460       470       480       490       500       510 

              550       560       570       580       590   
pF1KE2 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD
             520       530       540       550       560    

>>CCDS11493.1 DCAKD gene_id:79877|Hs108|chr17             (231 aa)
 initn: 238 init1: 238 opt: 331  Z-score: 365.1  bits: 76.2 E(32554): 5.2e-14
Smith-Waterman score: 331; 32.6% identity (67.4% similar) in 190 aa overlap (387-574:1-189)

        360       370       380       390       400       410      
pF1KE2 EDKVSSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVID
                                     ....::::  .:::::. : .. ::  :::
CCDS11                               MFLVGLTGGIASGKSSVIQVFQQLGCAVID
                                             10        20        30

        420       430       440       450       460       470      
pF1KE2 SDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPI
        : .....  :: ::.. .::.:::..: ..: :::::::. .:..  . ..:. :  : 
CCDS11 VDVMARHVVQPGYPAHRRIVEVFGTEVLLENGDINRKVLGDLIFNQPDRRQLLNAITHPE
               40        50        60        70        80        90

        480       490       500         510       520       530    
pF1KE2 IAKLAREEMDRAVAEGKRVCVIDAAVLLEAG--WQNLVHEVWTAVIPETEAVRRIVERDG
       : :   .:  .   .: :  ..:  .:.:.    . . : : .    .:. . :...:..
CCDS11 IRKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQ-LARLMRRNS
              100       110       120       130       140          

          540       550       560       570       580       590    
pF1KE2 LSEAAAQSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRIPKTHQALD 
       :..  :..:...:.   . ..... ::..  :  .:.:::                    
CCDS11 LNRKDAEARINAQLPLTDKARMARHVLDNSGEWSVTKRQVILLHTELERSLEYLPLRFGV
     150       160       170       180       190       200         

CCDS11 LTGLAAIASLLYLLTHYLLPYA
     210       220       230 




593 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:50:32 2016 done: Sun Nov  6 13:50:32 2016
 Total Scan time:  4.000 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]