FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2014, 592 aa
  1>>>pF1KE2014 592 - 592 aa - 592 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7123+/-0.00137; mu= 4.3169+/- 0.081
 mean_var=256.7524+/-52.524, 0's: 0 Z-trim(108.4): 30  B-trim: 0 in 0/51
 Lambda= 0.080042
 statistics sampled from 10142 (10156) to 10142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS9154.1 BRAP gene_id:8315|Hs108|chr12           ( 592) 3936 468.5  1e-131


>>CCDS9154.1 BRAP gene_id:8315|Hs108|chr12                (592 aa)
 initn: 3936 init1: 3936 opt: 3936  Z-score: 2478.1  bits: 468.5 E(32554): 1e-131
Smith-Waterman score: 3936; 100.0% identity (100.0% similar) in 592 aa overlap (1-592:1-592)

               10        20        30        40        50        60
pF1KE2 MSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKTTLASAVACLEGKSPGEKVAII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 HQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 HQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 QLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 RAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 TNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 TNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 IYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 AKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 AKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYL
              490       500       510       520       530       540

              550       560       570       580       590  
pF1KE2 ETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ETQQKINHLPAETRQEIQEGQINIAMASASSPASSGGSGKLPSRKGRSKRGK
              550       560       570       580       590  




592 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:42:35 2016 done: Sun Nov  6 14:42:36 2016
 Total Scan time:  2.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]