FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2004, 579 aa 1>>>pF1KE2004 579 - 579 aa - 579 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6079+/-0.000824; mu= 12.6599+/- 0.050 mean_var=85.6074+/-17.133, 0's: 0 Z-trim(109.2): 7 B-trim: 235 in 1/49 Lambda= 0.138618 statistics sampled from 10754 (10756) to 10754 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.33), width: 16 Scan time: 3.780 The best scores are: opt bits E(32554) CCDS32579.1 FLCN gene_id:201163|Hs108|chr17 ( 579) 3926 795.0 0 CCDS32580.1 FLCN gene_id:201163|Hs108|chr17 ( 342) 2015 412.7 3.6e-115 >>CCDS32579.1 FLCN gene_id:201163|Hs108|chr17 (579 aa) initn: 3926 init1: 3926 opt: 3926 Z-score: 4242.7 bits: 795.0 E(32554): 0 Smith-Waterman score: 3926; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579) 10 20 30 40 50 60 pF1KE2 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLADLEEESESWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLADLEEESESWD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 FRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLPVGCVRIIPYSSQYEEAYRCNFLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 FRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLPVGCVRIIPYSSQYEEAYRCNFLGL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SPHVQIPPHVLSSEFAVIVEVHAAARSTLHPVGCEDDQSLSKYEFVVTSGSPVAADRVGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SPHVQIPPHVLSSEFAVIVEVHAAARSTLHPVGCEDDQSLSKYEFVVTSGSPVAADRVGP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 TILNKIEAALTNQNLSVDVVDQCLVCLKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TILNKIEAALTNQNLSVDVVDQCLVCLKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSILG 490 500 510 520 530 540 550 560 570 pF1KE2 ASEEDNVKLLKFWMTGLSKTYKSHLMSTVRSPTASESRN ::::::::::::::::::::::::::::::::::::::: CCDS32 ASEEDNVKLLKFWMTGLSKTYKSHLMSTVRSPTASESRN 550 560 570 >>CCDS32580.1 FLCN gene_id:201163|Hs108|chr17 (342 aa) initn: 2015 init1: 2015 opt: 2015 Z-score: 2181.1 bits: 412.7 E(32554): 3.6e-115 Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290) 10 20 30 40 50 60 pF1KE2 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLADLEEESESWD :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLAGEAGVLLPGP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPS CCDS32 WPGWPWGGTSCLLSWQESLREGNAALNQPRTSLREAHPPISV 310 320 330 340 579 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:16:21 2016 done: Sun Nov 6 12:16:21 2016 Total Scan time: 3.780 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]