FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1980, 557 aa
  1>>>pF1KE1980 557 - 557 aa - 557 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7892+/-0.00109; mu= 3.6227+/- 0.065
 mean_var=238.9107+/-47.519, 0's: 0 Z-trim(110.5): 84  B-trim: 5 in 1/52
 Lambda= 0.082977
 statistics sampled from 11548 (11624) to 11548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.357), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS47280.1 IK gene_id:3550|Hs108|chr5             ( 557) 3700 456.4 4.1e-128


>>CCDS47280.1 IK gene_id:3550|Hs108|chr5                  (557 aa)
 initn: 3700 init1: 3700 opt: 3700  Z-score: 2413.5  bits: 456.4 E(32554): 4.1e-128
Smith-Waterman score: 3700; 100.0% identity (100.0% similar) in 557 aa overlap (1-557:1-557)

               10        20        30        40        50        60
pF1KE1 MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 STTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 STTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKAYERNELFLPGRMAYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKAYERNELFLPGRMAYV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRNKKLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRNKKLKK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERERDRERDRDRDRERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERERDRERDRDRDRERER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ERDRERERERDREREEEKKRHSYFEKPKVDDEPMDVDKGPGSTKELIKSINEKFAGSAGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ERDRERERERDREREEEKKRHSYFEKPKVDDEPMDVDKGPGSTKELIKSINEKFAGSAGW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 EGTESLKKPEDKKQLGDFFGMSNSYAECYPATMDDMAVDSDEEVDYSKMDQGNKKGPLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EGTESLKKPEDKKQLGDFFGMSNSYAECYPATMDDMAVDSDEEVDYSKMDQGNKKGPLGR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 WDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIE
              490       500       510       520       530       540

              550       
pF1KE1 KRKKMEADGVEVKRPKY
       :::::::::::::::::
CCDS47 KRKKMEADGVEVKRPKY
              550       




557 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:39:35 2016 done: Sun Nov  6 09:39:35 2016
 Total Scan time:  3.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]