FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1972, 540 aa
  1>>>pF1KE1972 540 - 540 aa - 540 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8931+/-0.00103; mu= -6.8357+/- 0.061
 mean_var=323.5670+/-69.848, 0's: 0 Z-trim(113.6): 67  B-trim: 0 in 0/54
 Lambda= 0.071300
 statistics sampled from 14143 (14196) to 14143 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.436), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS7122.1 STAM gene_id:8027|Hs108|chr10           ( 540) 3588 382.9 5.1e-106
CCDS2196.1 STAM2 gene_id:10254|Hs108|chr2          ( 525) 1417 159.6 8.4e-39


>>CCDS7122.1 STAM gene_id:8027|Hs108|chr10                (540 aa)
 initn: 3588 init1: 3588 opt: 3588  Z-score: 2016.8  bits: 382.9 E(32554): 5.1e-106
Smith-Waterman score: 3588; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KE1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 ELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIITVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 DDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPEPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAGNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAGNA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 QMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQAPVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQAPVY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 SPPPAATAAAATADVTLYQNAGPNMPQVPNYNLTSSTLPQPGGSQQPPQPQQPYSQKALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SPPPAATAAAATADVTLYQNAGPNMPQVPNYNLTSSTLPQPGGSQQPPQPQQPYSQKALL
              490       500       510       520       530       540

>>CCDS2196.1 STAM2 gene_id:10254|Hs108|chr2               (525 aa)
 initn: 1192 init1: 535 opt: 1417  Z-score: 810.1  bits: 159.6 E(32554): 8.4e-39
Smith-Waterman score: 1900; 56.3% identity (79.1% similar) in 540 aa overlap (1-533:1-523)

               10        20        30        40        50        60
pF1KE1 MPLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPH
       ::::..:::.:::::::.:.::.:::.::.:::::::.. .: ::::..::.::::: ::
CCDS21 MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPH
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KE1 VAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWTDEF
       ::.::::::::::.::::::::::::::::.::  :. ::.:::::::::.:::::..::
CCDS21 VALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE1 KNDPQLSLISAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANK-KEEEDLAK
       ..:::.::::: ::..::.:.:::  :::..  :       ::. :: .:: ::.::.::
CCDS21 QKDPQFSLISATIKSMKEEGITFPPAGSQTVSAA-------AKN-GTSSNKNKEDEDIAK
              130       140       150               160       170  

      180       190       200       210       220       230        
pF1KE1 AIELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAAEDNELTFKAGEIIT
       ::::::.::.:: :  ..::::.   :.:.   .:::::.:::::.:::::::: :::: 
CCDS21 AIELSLQEQKQQHTETKSLYPSSEIQLNNKV--ARKVRALYDFEAVEDNELTFKHGEIII
            180       190       200         210       220       230

      240       250       260       270       280       290        
pF1KE1 VLDDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEMIKTEKKTVQFSDDVQVETIEPEPE
       :::::: ::::::.:.:::::::::::..:. : :   ..: .: ..:::. :  . :::
CCDS21 VLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVDKLNV-IDDDVE-EIKKSEPE
              240       250       260       270        280         

      300       310       320       330       340       350        
pF1KE1 PAFIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELS
       :..:::::::. ::.::: ::.:..::  .:: :: .:.::::.::::::.:::::::::
CCDS21 PVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELS
      290       300       310       320       330       340        

      360       370       380       390       400       410        
pF1KE1 ELNVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGPPPSGAYLVAG
       ::::::.::: ::.::.:: :.::.:.::.   .:  .:.    :.:     .: :.  .
CCDS21 ELNVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQS
      350       360       370       380       390       400        

      420       430       440       450       460       470        
pF1KE1 NAQMSHLQSYSLPPEQLSSLSQAVVPPSANPALPSQQTQAAYPNTMVSSVQGNTYPSQAP
         :..  ::::: :.:.. : .  .::..: .. .: .:..: .:  ..:.. :: .:  
CCDS21 IHQVTVAQSYSLGPDQIGPLRS--LPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQNS
      410       420       430         440       450       460      

      480           490       500       510        520       530   
pF1KE1 VYSPPPAATA----AAATADVTLYQNAGPNMPQVPNYNLTSSTLP-QPGGSQQPPQPQQP
         .   ..::     . ..:.. :::.  :.::. .. .   :.: .: ..:.    :::
CCDS21 NLQSATGTTAYTQQMGMSVDMSSYQNTTSNLPQLAGFPV---TVPAHPVAQQHTNYHQQP
        470       480       490       500          510       520   

           540
pF1KE1 YSQKALL
              
CCDS21 LL     
              




540 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:33:21 2016 done: Sun Nov  6 15:33:21 2016
 Total Scan time:  3.070 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]