FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1954, 510 aa
  1>>>pF1KE1954 510 - 510 aa - 510 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8703+/-0.00105; mu= 15.5253+/- 0.063
 mean_var=69.7455+/-13.968, 0's: 0 Z-trim(103.8): 12  B-trim: 0 in 0/49
 Lambda= 0.153573
 statistics sampled from 7565 (7570) to 7565 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.233), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS1617.1 FH gene_id:2271|Hs108|chr1              ( 510) 3300 740.5  1e-213


>>CCDS1617.1 FH gene_id:2271|Hs108|chr1                   (510 aa)
 initn: 3300 init1: 3300 opt: 3300  Z-score: 3950.4  bits: 740.5 E(32554): 1e-213
Smith-Waterman score: 3300; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510)

               10        20        30        40        50        60
pF1KE1 MYRALRLLARSRPLVRAPAAALASAPGLGGAAVPSFWPPNAARMASQNSFRIEYDTFGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MYRALRLLARSRPLVRAPAAALASAPGLGGAAVPSFWPPNAARMASQNSFRIEYDTFGEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIGFAEKVAAKVAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIGFAEKVAAKVAAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 TGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 RLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 RLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGS
              430       440       450       460       470       480

              490       500       510
pF1KE1 TLKETAIELGYLTAEQFDEWVKPKDMLGPK
       ::::::::::::::::::::::::::::::
CCDS16 TLKETAIELGYLTAEQFDEWVKPKDMLGPK
              490       500       510




510 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:20:38 2016 done: Sun Nov  6 21:20:39 2016
 Total Scan time:  2.610 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]