Result of FASTA (omim) for
pFN21AE1953
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1953, 509 aa
1>>>pF1KE1953 509 - 509 aa - 509 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3735+/-0.00043; mu= 18.3223+/- 0.027
mean_var=73.9746+/-14.132, 0's: 0 Z-trim(110.5): 16 B-trim: 21 in 1/54
Lambda= 0.149119
statistics sampled from 18834 (18841) to 18834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.221), width: 16
Scan time: 9.240
The best scores are: opt bits E(85289)
NP_065861 (OMIM: 611023,616539) tRNA (guanine(37)- ( 509) 3364 733.6 3.3e-211
XP_011535319 (OMIM: 611023,616539) PREDICTED: tRNA ( 536) 3332 726.7 4.1e-209
XP_005267973 (OMIM: 611023,616539) PREDICTED: tRNA ( 537) 3332 726.7 4.1e-209
NP_060426 (OMIM: 611244) tRNA wybutosine-synthesiz ( 448) 153 42.7 0.0027
>>NP_065861 (OMIM: 611023,616539) tRNA (guanine(37)-N1)- (509 aa)
initn: 3364 init1: 3364 opt: 3364 Z-score: 3912.8 bits: 733.6 E(85289): 3.3e-211
Smith-Waterman score: 3364; 99.8% identity (100.0% similar) in 509 aa overlap (1-509:1-509)
10 20 30 40 50 60
pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE1 FSKDANPVEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN
430 440 450 460 470 480
490 500
pF1KE1 PENHEDPPLKRQRTAEAFSDEKTQIVSNT
:::::::::::::::::::::::::::::
NP_065 PENHEDPPLKRQRTAEAFSDEKTQIVSNT
490 500
>>XP_011535319 (OMIM: 611023,616539) PREDICTED: tRNA (gu (536 aa)
initn: 3332 init1: 3332 opt: 3332 Z-score: 3875.2 bits: 726.7 E(85289): 4.1e-209
Smith-Waterman score: 3332; 99.8% identity (100.0% similar) in 505 aa overlap (5-509:32-536)
10 20 30
pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVA
::::::::::::::::::::::::::::::
XP_011 VQGRYQPAQGCSLPCAAWAQKHREVTHPPRILWRPFGFSGRFLKLESHSITESKSLIPVA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE1 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE1 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE1 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPVEDVRQRAGAVLGISLEACSSVHLVRN
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
XP_011 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN
430 440 450 460 470 480
460 470 480 490 500
pF1KE1 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT
490 500 510 520 530
>>XP_005267973 (OMIM: 611023,616539) PREDICTED: tRNA (gu (537 aa)
initn: 3332 init1: 3332 opt: 3332 Z-score: 3875.2 bits: 726.7 E(85289): 4.1e-209
Smith-Waterman score: 3332; 99.8% identity (100.0% similar) in 505 aa overlap (5-509:33-537)
10 20 30
pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVA
::::::::::::::::::::::::::::::
XP_005 RALFAANSDDVIEDPPIHPRPTSDRYRSGRILWRPFGFSGRFLKLESHSITESKSLIPVA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE1 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE1 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE1 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE1 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE1 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE1 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE1 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPVEDVRQRAGAVLGISLEACSSVHLVRN
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
XP_005 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN
430 440 450 460 470 480
460 470 480 490 500
pF1KE1 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT
490 500 510 520 530
>>NP_060426 (OMIM: 611244) tRNA wybutosine-synthesizing (448 aa)
initn: 119 init1: 96 opt: 153 Z-score: 180.2 bits: 42.7 E(85289): 0.0027
Smith-Waterman score: 153; 25.5% identity (57.7% similar) in 149 aa overlap (248-393:185-332)
220 230 240 250 260 270
pF1KE1 FKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFS
:. . .: :... . .: .:. :.:: .
NP_060 NLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHV-DNGIRYKFDVT
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE1 KVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIP--VAKKNCTVFANDLNPESHKW
. ... ::. :.. : :.:: :..::.: :..: : : : . ::..
NP_060 QCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVA
220 230 240 250 260 270
340 350 360 370 380 390
pF1KE1 LLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEE-LMQLLGLSKERKPSVHVVMNLPAKAIE
: : ..: : .. .. :.. . . . .. .. :. :.: : . :. : .:
NP_060 LRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGIL
280 290 300 310 320 330
400 410 420 430 440 450
pF1KE1 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPVEDVRQRAGAVLGISLEACSSVHLVRN
NP_060 HIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQ
340 350 360 370 380 390
509 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 20:39:44 2016 done: Sun Nov 6 20:39:45 2016
Total Scan time: 9.240 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]