FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1953, 509 aa
  1>>>pF1KE1953 509 - 509 aa - 509 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4992+/-0.000982; mu= 17.2693+/- 0.059
 mean_var=66.9712+/-13.451, 0's: 0 Z-trim(103.7): 21  B-trim: 0 in 0/51
 Lambda= 0.156722
 statistics sampled from 7514 (7518) to 7514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.231), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS32092.1 TRMT5 gene_id:57570|Hs108|chr14        ( 509) 3364 769.9       0


>>CCDS32092.1 TRMT5 gene_id:57570|Hs108|chr14             (509 aa)
 initn: 3364 init1: 3364 opt: 3364  Z-score: 4109.1  bits: 769.9 E(32554):    0
Smith-Waterman score: 3364; 99.8% identity (100.0% similar) in 509 aa overlap (1-509:1-509)

               10        20        30        40        50        60
pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 FSKDANPVEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN
              430       440       450       460       470       480

              490       500         
pF1KE1 PENHEDPPLKRQRTAEAFSDEKTQIVSNT
       :::::::::::::::::::::::::::::
CCDS32 PENHEDPPLKRQRTAEAFSDEKTQIVSNT
              490       500         




509 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:39:43 2016 done: Sun Nov  6 20:39:43 2016
 Total Scan time:  3.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]