Result of FASTA (omim) for
pFN21AE1930
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1930, 469 aa
1>>>pF1KE1930 469 - 469 aa - 469 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8020+/-0.000547; mu= -7.4984+/- 0.034
mean_var=396.3650+/-79.385, 0's: 0 Z-trim(117.7): 3 B-trim: 33 in 1/56
Lambda= 0.064421
statistics sampled from 30027 (30030) to 30027 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.352), width: 16
Scan time: 10.660
The best scores are: opt bits E(85289)
NP_005870 (OMIM: 605958,616777) E3 ubiquitin-prote ( 469) 3069 299.8 1e-80
XP_011531566 (OMIM: 605958,616777) PREDICTED: E3 u ( 392) 2420 239.4 1.3e-62
XP_016861015 (OMIM: 605958,616777) PREDICTED: E3 u ( 370) 1555 159.0 2e-38
>>NP_005870 (OMIM: 605958,616777) E3 ubiquitin-protein l (469 aa)
initn: 3069 init1: 3069 opt: 3069 Z-score: 1570.1 bits: 299.8 E(85289): 1e-80
Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469)
10 20 30 40 50 60
pF1KE1 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
370 380 390 400 410 420
430 440 450 460
pF1KE1 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
430 440 450 460
>>XP_011531566 (OMIM: 605958,616777) PREDICTED: E3 ubiqu (392 aa)
initn: 2420 init1: 2420 opt: 2420 Z-score: 1245.0 bits: 239.4 E(85289): 1.3e-62
Smith-Waterman score: 2420; 100.0% identity (100.0% similar) in 376 aa overlap (94-469:17-392)
70 80 90 100 110 120
pF1KE1 FDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVSLQQ
::::::::::::::::::::::::::::::
XP_011 MDGQAFPFPPPSTPAPDKEKRDSQVIIDTLRDTLEERNATVVSLQQ
10 20 30 40
130 140 150 160 170 180
pF1KE1 ALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEM
50 60 70 80 90 100
190 200 210 220 230 240
pF1KE1 IRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSEL
110 120 130 140 150 160
250 260 270 280 290 300
pF1KE1 DQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNL
170 180 190 200 210 220
310 320 330 340 350 360
pF1KE1 KLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGPRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGPRKE
230 240 250 260 270 280
370 380 390 400 410 420
pF1KE1 SQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGLGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGLGGR
290 300 310 320 330 340
430 440 450 460
pF1KE1 TKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
350 360 370 380 390
>>XP_016861015 (OMIM: 605958,616777) PREDICTED: E3 ubiqu (370 aa)
initn: 1555 init1: 1555 opt: 1555 Z-score: 810.9 bits: 159.0 E(85289): 2e-38
Smith-Waterman score: 2244; 78.9% identity (78.9% similar) in 469 aa overlap (1-469:1-370)
10 20 30 40 50 60
pF1KE1 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV
:::::::::::::::
XP_016 LQQALGKAEMLCSTL---------------------------------------------
130
190 200 210 220 230 240
pF1KE1 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY
::::::
XP_016 ------------------------------------------------------KLQTVY
140
250 260 270 280 290 300
pF1KE1 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE1 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP
210 220 230 240 250 260
370 380 390 400 410 420
pF1KE1 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
270 280 290 300 310 320
430 440 450 460
pF1KE1 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS
330 340 350 360 370
469 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:47:40 2016 done: Sun Nov 6 17:47:42 2016
Total Scan time: 10.660 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]