FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1904, 434 aa
  1>>>pF1KE1904 434 - 434 aa - 434 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6922+/-0.000767; mu= 16.3161+/- 0.047
 mean_var=78.7511+/-15.838, 0's: 0 Z-trim(109.1): 16  B-trim: 0 in 0/49
 Lambda= 0.144526
 statistics sampled from 10667 (10674) to 10667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.328), width:  16
 Scan time:  3.080

The best scores are:                                      opt bits E(32554)
CCDS1257.1 MAEL gene_id:84944|Hs108|chr1           ( 434) 2976 629.9 1.5e-180
CCDS72975.1 MAEL gene_id:84944|Hs108|chr1          ( 378) 2598 551.0 7.1e-157
CCDS65712.1 MAEL gene_id:84944|Hs108|chr1          ( 403) 2470 524.3 8.1e-149


>>CCDS1257.1 MAEL gene_id:84944|Hs108|chr1                (434 aa)
 initn: 2976 init1: 2976 opt: 2976  Z-score: 3354.9  bits: 629.9 E(32554): 1.5e-180
Smith-Waterman score: 2976; 99.8% identity (100.0% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KE1 MPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMARE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 WRAAQGKDPGPSEKQKPVFTPLRRPGMLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WRAAQGKDPGPSEKQKPVFTPLRRPGMLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQAASDSSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQAASDSSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 IPISNFERGHNQATVLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHMAKASEIRQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IPISNFERGHNQATVLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHMAKASEIRQDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QLLTVEDLVVGIYQQKFLKEPSKTWIRSLLDVAMWDYSSNTRCKWHEENDILFCALAVCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QLLTVEDLVVGIYQQKFLKEPSKTWIRSLLDVAMWDYSSNTRCKWHEENDILFCALAVCK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KIAYCISNSLATLFGIQLTEAHVPLQDYEASNSVTPKMVVLDAGRYQKLRVGSSGFSHFS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS12 KIAYCISNSLATLFGIQLTEAHVPLQDYEASNSVTPKMVVLDAGRYQKLRVGSSGFSHFN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 SSNEEQRSNTPIGDYPSRAKISGQNSSVRGRGITRLLESISNSSSNIHKFSNCDTSLSPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSNEEQRSNTPIGDYPSRAKISGQNSSVRGRGITRLLESISNSSSNIHKFSNCDTSLSPY
              370       380       390       400       410       420

              430    
pF1KE1 MSQKDGYKSFSSLS
       ::::::::::::::
CCDS12 MSQKDGYKSFSSLS
              430    

>>CCDS72975.1 MAEL gene_id:84944|Hs108|chr1               (378 aa)
 initn: 2598 init1: 2598 opt: 2598  Z-score: 2929.8  bits: 551.0 E(32554): 7.1e-157
Smith-Waterman score: 2598; 99.7% identity (100.0% similar) in 378 aa overlap (57-434:1-378)

         30        40        50        60        70        80      
pF1KE1 LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGPSEKQKPVFTPLRRPG
                                     ::::::::::::::::::::::::::::::
CCDS72                               MAREWRAAQGKDPGPSEKQKPVFTPLRRPG
                                             10        20        30

         90       100       110       120       130       140      
pF1KE1 MLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNIFSHGELPPHCEQRFLPCEIGCVKYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNIFSHGELPPHCEQRFLPCEIGCVKYSL
               40        50        60        70        80        90

        150       160       170       180       190       200      
pF1KE1 QEGIMADFHSFINPGEIPRGFRFHCQAASDSSHKIPISNFERGHNQATVLQNLYRFIHPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QEGIMADFHSFINPGEIPRGFRFHCQAASDSSHKIPISNFERGHNQATVLQNLYRFIHPN
              100       110       120       130       140       150

        210       220       230       240       250       260      
pF1KE1 PGNWPPIYCKSDDRTRVNWCLKHMAKASEIRQDLQLLTVEDLVVGIYQQKFLKEPSKTWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PGNWPPIYCKSDDRTRVNWCLKHMAKASEIRQDLQLLTVEDLVVGIYQQKFLKEPSKTWI
              160       170       180       190       200       210

        270       280       290       300       310       320      
pF1KE1 RSLLDVAMWDYSSNTRCKWHEENDILFCALAVCKKIAYCISNSLATLFGIQLTEAHVPLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RSLLDVAMWDYSSNTRCKWHEENDILFCALAVCKKIAYCISNSLATLFGIQLTEAHVPLQ
              220       230       240       250       260       270

        330       340       350       360       370       380      
pF1KE1 DYEASNSVTPKMVVLDAGRYQKLRVGSSGFSHFSSSNEEQRSNTPIGDYPSRAKISGQNS
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS72 DYEASNSVTPKMVVLDAGRYQKLRVGSSGFSHFNSSNEEQRSNTPIGDYPSRAKISGQNS
              280       290       300       310       320       330

        390       400       410       420       430    
pF1KE1 SVRGRGITRLLESISNSSSNIHKFSNCDTSLSPYMSQKDGYKSFSSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SVRGRGITRLLESISNSSSNIHKFSNCDTSLSPYMSQKDGYKSFSSLS
              340       350       360       370        

>>CCDS65712.1 MAEL gene_id:84944|Hs108|chr1               (403 aa)
 initn: 2463 init1: 2463 opt: 2470  Z-score: 2785.2  bits: 524.3 E(32554): 8.1e-149
Smith-Waterman score: 2694; 92.6% identity (92.9% similar) in 434 aa overlap (1-434:1-403)

               10        20        30        40        50        60
pF1KE1 MPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMARE
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS65 MPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWA----------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE1 WRAAQGKDPGPSEKQKPVFTPLRRPGMLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNI
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ---------------KPVFTPLRRPGMLVPKQNVSPPDMSALSLKGDQALLGGIFYFLNI
                          50        60        70        80         

              130       140       150       160       170       180
pF1KE1 FSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQAASDSSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FSHGELPPHCEQRFLPCEIGCVKYSLQEGIMADFHSFINPGEIPRGFRFHCQAASDSSHK
      90       100       110       120       130       140         

              190       200       210       220       230       240
pF1KE1 IPISNFERGHNQATVLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHMAKASEIRQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 IPISNFERGHNQATVLQNLYRFIHPNPGNWPPIYCKSDDRTRVNWCLKHMAKASEIRQDL
     150       160       170       180       190       200         

              250       260       270       280       290       300
pF1KE1 QLLTVEDLVVGIYQQKFLKEPSKTWIRSLLDVAMWDYSSNTRCKWHEENDILFCALAVCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 QLLTVEDLVVGIYQQKFLKEPSKTWIRSLLDVAMWDYSSNTRCKWHEENDILFCALAVCK
     210       220       230       240       250       260         

              310       320       330       340       350       360
pF1KE1 KIAYCISNSLATLFGIQLTEAHVPLQDYEASNSVTPKMVVLDAGRYQKLRVGSSGFSHFS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
CCDS65 KIAYCISNSLATLFGIQLTEAHVPLQDYEASNSVTPKMVVLDAGRYQKLRVGSSGFSHFN
     270       280       290       300       310       320         

              370       380       390       400       410       420
pF1KE1 SSNEEQRSNTPIGDYPSRAKISGQNSSVRGRGITRLLESISNSSSNIHKFSNCDTSLSPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SSNEEQRSNTPIGDYPSRAKISGQNSSVRGRGITRLLESISNSSSNIHKFSNCDTSLSPY
     330       340       350       360       370       380         

              430    
pF1KE1 MSQKDGYKSFSSLS
       ::::::::::::::
CCDS65 MSQKDGYKSFSSLS
     390       400   




434 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:49:04 2016 done: Sun Nov  6 18:49:04 2016
 Total Scan time:  3.080 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]