FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1902, 429 aa
  1>>>pF1KE1902 429 - 429 aa - 429 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9467+/-0.000406; mu= 2.2293+/- 0.025
 mean_var=286.3379+/-56.987, 0's: 0 Z-trim(120.9): 48  B-trim: 83 in 1/55
 Lambda= 0.075794
 statistics sampled from 36715 (36771) to 36715 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.431), width:  16
 Scan time: 10.760

The best scores are:                                      opt bits E(85289)
NP_077285 (OMIM: 610669) TNFAIP3-interacting prote ( 429) 2854 325.4 1.7e-88
NP_001154999 (OMIM: 610669) TNFAIP3-interacting pr ( 322) 2169 250.4 4.9e-66
NP_001278945 (OMIM: 610669) TNFAIP3-interacting pr ( 346) 1423 168.9 1.9e-41


>>NP_077285 (OMIM: 610669) TNFAIP3-interacting protein 2  (429 aa)
 initn: 2854 init1: 2854 opt: 2854  Z-score: 1709.8  bits: 325.4 E(85289): 1.7e-88
Smith-Waterman score: 2854; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429)

               10        20        30        40        50        60
pF1KE1 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
              370       380       390       400       410       420

                
pF1KE1 LRHVAECCQ
       :::::::::
NP_077 LRHVAECCQ
                

>>NP_001154999 (OMIM: 610669) TNFAIP3-interacting protei  (322 aa)
 initn: 2169 init1: 2169 opt: 2169  Z-score: 1306.5  bits: 250.4 E(85289): 4.9e-66
Smith-Waterman score: 2169; 100.0% identity (100.0% similar) in 322 aa overlap (108-429:1-322)

        80        90       100       110       120       130       
pF1KE1 LRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHEREKEVVLLRRSMAEGERAR
                                     ::::::::::::::::::::::::::::::
NP_001                               MQQLLSQPQHEREKEVVLLRRSMAEGERAR
                                             10        20        30

       140       150       160       170       180       190       
pF1KE1 AASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHT
               40        50        60        70        80        90

       200       210       220       230       240       250       
pF1KE1 SVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELM
              100       110       120       130       140       150

       260       270       280       290       300       310       
pF1KE1 RKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR
              160       170       180       190       200       210

       320       330       340       350       360       370       
pF1KE1 ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRP
              220       230       240       250       260       270

       380       390       400       410       420         
pF1KE1 GTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ
              280       290       300       310       320  

>>NP_001278945 (OMIM: 610669) TNFAIP3-interacting protei  (346 aa)
 initn: 1453 init1: 1421 opt: 1423  Z-score: 865.3  bits: 168.9 E(85289): 1.9e-41
Smith-Waterman score: 2138; 80.7% identity (80.7% similar) in 429 aa overlap (1-429:1-346)

               10        20        30        40        50        60
pF1KE1 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG
       :::::::::::::::::::::::::::::::::::::::                     
NP_001 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTH---------------------
              190       200       210                              

              250       260       270       280       290       300
pF1KE1 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE1 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --ILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
       220       230       240       250       260       270       

              370       380       390       400       410       420
pF1KE1 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
       280       290       300       310       320       330       

                
pF1KE1 LRHVAECCQ
       :::::::::
NP_001 LRHVAECCQ
       340      




429 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:34:13 2016 done: Sun Nov  6 17:34:14 2016
 Total Scan time: 10.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]