FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1902, 429 aa
  1>>>pF1KE1902 429 - 429 aa - 429 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5516+/-0.000909; mu= 4.2533+/- 0.054
 mean_var=223.8653+/-44.798, 0's: 0 Z-trim(113.5): 51  B-trim: 15 in 1/52
 Lambda= 0.085720
 statistics sampled from 14079 (14126) to 14079 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.434), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS3362.1 TNIP2 gene_id:79155|Hs108|chr4          ( 429) 2854 365.5 5.5e-101
CCDS54714.1 TNIP2 gene_id:79155|Hs108|chr4         ( 322) 2169 280.7 1.4e-75
CCDS75093.1 TNIP2 gene_id:79155|Hs108|chr4         ( 346) 1423 188.5 8.8e-48


>>CCDS3362.1 TNIP2 gene_id:79155|Hs108|chr4               (429 aa)
 initn: 2854 init1: 2854 opt: 2854  Z-score: 1926.5  bits: 365.5 E(32554): 5.5e-101
Smith-Waterman score: 2854; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429)

               10        20        30        40        50        60
pF1KE1 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
              370       380       390       400       410       420

                
pF1KE1 LRHVAECCQ
       :::::::::
CCDS33 LRHVAECCQ
                

>>CCDS54714.1 TNIP2 gene_id:79155|Hs108|chr4              (322 aa)
 initn: 2169 init1: 2169 opt: 2169  Z-score: 1470.3  bits: 280.7 E(32554): 1.4e-75
Smith-Waterman score: 2169; 100.0% identity (100.0% similar) in 322 aa overlap (108-429:1-322)

        80        90       100       110       120       130       
pF1KE1 LRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHEREKEVVLLRRSMAEGERAR
                                     ::::::::::::::::::::::::::::::
CCDS54                               MQQLLSQPQHEREKEVVLLRRSMAEGERAR
                                             10        20        30

       140       150       160       170       180       190       
pF1KE1 AASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHT
               40        50        60        70        80        90

       200       210       220       230       240       250       
pF1KE1 SVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELM
              100       110       120       130       140       150

       260       270       280       290       300       310       
pF1KE1 RKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR
              160       170       180       190       200       210

       320       330       340       350       360       370       
pF1KE1 ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRP
              220       230       240       250       260       270

       380       390       400       410       420         
pF1KE1 GTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ
              280       290       300       310       320  

>>CCDS75093.1 TNIP2 gene_id:79155|Hs108|chr4              (346 aa)
 initn: 1453 init1: 1421 opt: 1423  Z-score: 971.3  bits: 188.5 E(32554): 8.8e-48
Smith-Waterman score: 2138; 80.7% identity (80.7% similar) in 429 aa overlap (1-429:1-346)

               10        20        30        40        50        60
pF1KE1 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG
       :::::::::::::::::::::::::::::::::::::::                     
CCDS75 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTH---------------------
              190       200       210                              

              250       260       270       280       290       300
pF1KE1 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE
                                                                   
CCDS75 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE1 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 --ILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK
       220       230       240       250       260       270       

              370       380       390       400       410       420
pF1KE1 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL
       280       290       300       310       320       330       

                
pF1KE1 LRHVAECCQ
       :::::::::
CCDS75 LRHVAECCQ
       340      




429 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:34:12 2016 done: Sun Nov  6 17:34:12 2016
 Total Scan time:  3.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]