FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1891, 420 aa
  1>>>pF1KE1891 420 - 420 aa - 420 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9026+/-0.000335; mu= 15.2956+/- 0.021
 mean_var=85.7090+/-17.196, 0's: 0 Z-trim(115.2): 21  B-trim: 0 in 0/55
 Lambda= 0.138535
 statistics sampled from 25541 (25562) to 25541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.3), width:  16
 Scan time:  9.490

The best scores are:                                      opt bits E(85289)
NP_060616 (OMIM: 612600) rRNA methyltransferase 3, ( 420) 2814 572.2 8.3e-163
NP_001304876 (OMIM: 612600) rRNA methyltransferase ( 224) 1522 313.8 2.7e-85


>>NP_060616 (OMIM: 612600) rRNA methyltransferase 3, mit  (420 aa)
 initn: 2814 init1: 2814 opt: 2814  Z-score: 3043.9  bits: 572.2 E(85289): 8.3e-163
Smith-Waterman score: 2814; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)

               10        20        30        40        50        60
pF1KE1 MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 APSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH
              370       380       390       400       410       420

>>NP_001304876 (OMIM: 612600) rRNA methyltransferase 3,   (224 aa)
 initn: 1522 init1: 1522 opt: 1522  Z-score: 1652.4  bits: 313.8 E(85289): 2.7e-85
Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 224 aa overlap (197-420:1-224)

        170       180       190       200       210       220      
pF1KE1 KVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTI
                                     ::::::::::::::::::::::::::::::
NP_001                               MTYPKTQLQHSLPLLLICDNLRDPGNLGTI
                                             10        20        30

        230       240       250       260       270       280      
pF1KE1 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYV
               40        50        60        70        80        90

        290       300       310       320       330       340      
pF1KE1 ADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDW
              100       110       120       130       140       150

        350       360       370       380       390       400      
pF1KE1 TEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL
              160       170       180       190       200       210

        410       420
pF1KE1 RGRAEDLSRDRSYH
       ::::::::::::::
NP_001 RGRAEDLSRDRSYH
              220    




420 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:01:25 2016 done: Sun Nov  6 14:01:27 2016
 Total Scan time:  9.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]