Result of FASTA (ccds) for
pFN21AE1882
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1882, 401 aa
1>>>pF1KE1882 401 - 401 aa - 401 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0707+/-0.000976; mu= 8.9754+/- 0.059
mean_var=106.0194+/-21.603, 0's: 0 Z-trim(107.4): 20 B-trim: 66 in 1/52
Lambda= 0.124561
statistics sampled from 9572 (9582) to 9572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.294), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS58245.1 DCTN2 gene_id:10540|Hs108|chr12 ( 401) 2522 463.9 1.2e-130
CCDS73489.1 DCTN2 gene_id:10540|Hs108|chr12 ( 403) 2508 461.4 6.9e-130
CCDS44930.1 DCTN2 gene_id:10540|Hs108|chr12 ( 406) 2502 460.3 1.5e-129
>>CCDS58245.1 DCTN2 gene_id:10540|Hs108|chr12 (401 aa)
initn: 2522 init1: 2522 opt: 2522 Z-score: 2459.0 bits: 463.9 E(32554): 1.2e-130
Smith-Waterman score: 2522; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KE1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 KTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 EDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMI
310 320 330 340 350 360
370 380 390 400
pF1KE1 ANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
:::::::::::::::::::::::::::::::::::::::::
CCDS58 ANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
370 380 390 400
>>CCDS73489.1 DCTN2 gene_id:10540|Hs108|chr12 (403 aa)
initn: 2281 init1: 2281 opt: 2508 Z-score: 2445.4 bits: 461.4 E(32554): 6.9e-130
Smith-Waterman score: 2508; 99.5% identity (99.5% similar) in 403 aa overlap (1-401:1-403)
10 20 30 40 50
pF1KE1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE--ELTSTSVEHIIVNPNAAYDKFK
:::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS73 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELTSTSVEHIIVNPNAAYDKFK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 KIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 LQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
310 320 330 340 350 360
360 370 380 390 400
pF1KE1 MIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
:::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
370 380 390 400
>>CCDS44930.1 DCTN2 gene_id:10540|Hs108|chr12 (406 aa)
initn: 2508 init1: 2281 opt: 2502 Z-score: 2439.5 bits: 460.3 E(32554): 1.5e-129
Smith-Waterman score: 2502; 98.8% identity (98.8% similar) in 406 aa overlap (1-401:1-406)
10 20 30 40 50
pF1KE1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS44 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 EVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 RLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 TAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAK
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 HKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDT
310 320 330 340 350 360
360 370 380 390 400
pF1KE1 TQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
370 380 390 400
401 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:03:11 2016 done: Sun Nov 6 21:03:12 2016
Total Scan time: 3.130 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]