FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1876, 398 aa
  1>>>pF1KE1876 398 - 398 aa - 398 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7227+/-0.000923; mu= 14.8810+/- 0.056
 mean_var=68.0335+/-13.524, 0's: 0 Z-trim(105.1): 20  B-trim: 0 in 0/50
 Lambda= 0.155494
 statistics sampled from 8236 (8240) to 8236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS1120.1 DAP3 gene_id:7818|Hs108|chr1            ( 398) 2691 612.7 1.8e-175
CCDS55647.1 DAP3 gene_id:7818|Hs108|chr1           ( 357) 2328 531.3 5.4e-151
CCDS55646.1 DAP3 gene_id:7818|Hs108|chr1           ( 364) 2081 475.9 2.6e-134


>>CCDS1120.1 DAP3 gene_id:7818|Hs108|chr1                 (398 aa)
 initn: 2691 init1: 2691 opt: 2691  Z-score: 3263.7  bits: 612.7 E(32554): 1.8e-175
Smith-Waterman score: 2691; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)

               10        20        30        40        50        60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
              310       320       330       340       350       360

              370       380       390        
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
       ::::::::::::::::::::::::::::::::::::::
CCDS11 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
              370       380       390        

>>CCDS55647.1 DAP3 gene_id:7818|Hs108|chr1                (357 aa)
 initn: 2400 init1: 2321 opt: 2328  Z-score: 2824.3  bits: 531.3 E(32554): 5.4e-151
Smith-Waterman score: 2328; 98.0% identity (98.6% similar) in 353 aa overlap (46-398:8-357)

          20        30        40        50        60        70     
pF1KE1 LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDL
                                     : ::: ..   :::::::::::::::::::
CCDS55                        MMLKGITRLISRIHK---AKHGDQHEGQHYNISPQDL
                                      10           20        30    

          80        90       100       110       120       130     
pF1KE1 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKT
           40        50        60        70        80        90    

         140       150       160       170       180       190     
pF1KE1 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
          100       110       120       130       140       150    

         200       210       220       230       240       250     
pF1KE1 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGM
          160       170       180       190       200       210    

         260       270       280       290       300       310     
pF1KE1 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGS
          220       230       240       250       260       270    

         320       330       340       350       360       370     
pF1KE1 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEE
          280       290       300       310       320       330    

         380       390        
pF1KE1 GKKELLFLSNANPSLLERHCAYL
       :::::::::::::::::::::::
CCDS55 GKKELLFLSNANPSLLERHCAYL
          340       350       

>>CCDS55646.1 DAP3 gene_id:7818|Hs108|chr1                (364 aa)
 initn: 2093 init1: 2070 opt: 2081  Z-score: 2524.7  bits: 475.9 E(32554): 2.6e-134
Smith-Waterman score: 2362; 91.5% identity (91.5% similar) in 398 aa overlap (1-398:1-364)

               10        20        30        40        50        60
pF1KE1 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS55 MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDP----
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 DQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYP
                                     ::::::::::::::::::::::::::::::
CCDS55 ------------------------------VKTFSEACLMVRKPALELLHYLKNTSFAYP
                                       60        70        80      

              130       140       150       160       170       180
pF1KE1 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQ
         90       100       110       120       130       140      

              190       200       210       220       230       240
pF1KE1 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KE1 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKND
        210       220       230       240       250       260      

              310       320       330       340       350       360
pF1KE1 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYY
        270       280       290       300       310       320      

              370       380       390        
pF1KE1 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
       ::::::::::::::::::::::::::::::::::::::
CCDS55 LENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL
        330       340       350       360    




398 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:08:23 2016 done: Sun Nov  6 21:08:23 2016
 Total Scan time:  2.410 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]