Result of FASTA (omim) for
pFN21AE1870
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1870, 391 aa
1>>>pF1KE1870 391 - 391 aa - 391 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3588+/-0.000408; mu= 16.8228+/- 0.025
mean_var=67.0532+/-13.387, 0's: 0 Z-trim(111.9): 55 B-trim: 0 in 0/49
Lambda= 0.156626
statistics sampled from 20567 (20622) to 20567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.242), width: 16
Scan time: 8.360
The best scores are: opt bits E(85289)
NP_004403 (OMIM: 602478) tRNA (cytosine(38)-C(5))- ( 391) 2543 583.7 2.5e-166
XP_006717451 (OMIM: 602478) PREDICTED: tRNA (cytos ( 384) 2469 567.0 2.7e-161
XP_005252429 (OMIM: 602478) PREDICTED: tRNA (cytos ( 377) 2350 540.1 3.3e-153
XP_005252431 (OMIM: 602478) PREDICTED: tRNA (cytos ( 359) 2345 538.9 6.9e-153
XP_016871292 (OMIM: 602478) PREDICTED: tRNA (cytos ( 320) 2082 479.5 4.9e-135
XP_016871294 (OMIM: 602478) PREDICTED: tRNA (cytos ( 320) 2082 479.5 4.9e-135
XP_016871293 (OMIM: 602478) PREDICTED: tRNA (cytos ( 320) 2082 479.5 4.9e-135
NP_001307936 (OMIM: 602478) tRNA (cytosine(38)-C(5 ( 320) 2082 479.5 4.9e-135
XP_016871291 (OMIM: 602478) PREDICTED: tRNA (cytos ( 320) 2082 479.5 4.9e-135
XP_016871295 (OMIM: 602478) PREDICTED: tRNA (cytos ( 313) 2008 462.8 5.2e-130
XP_011517647 (OMIM: 602478) PREDICTED: tRNA (cytos ( 332) 1986 457.8 1.7e-128
XP_011517646 (OMIM: 602478) PREDICTED: tRNA (cytos ( 332) 1986 457.8 1.7e-128
XP_005252435 (OMIM: 602478) PREDICTED: tRNA (cytos ( 306) 1889 435.9 6.3e-122
XP_016871296 (OMIM: 602478) PREDICTED: tRNA (cytos ( 299) 1815 419.1 6.7e-117
XP_016871297 (OMIM: 602478) PREDICTED: tRNA (cytos ( 299) 1815 419.1 6.7e-117
XP_016871300 (OMIM: 602478) PREDICTED: tRNA (cytos ( 274) 1708 394.9 1.2e-109
XP_016871301 (OMIM: 602478) PREDICTED: tRNA (cytos ( 274) 1708 394.9 1.2e-109
XP_005252432 (OMIM: 602478) PREDICTED: tRNA (cytos ( 345) 1708 395.0 1.4e-109
NP_001307935 (OMIM: 602478) tRNA (cytosine(38)-C(5 ( 310) 1703 393.8 2.9e-109
XP_011517645 (OMIM: 602478) PREDICTED: tRNA (cytos ( 369) 1703 393.9 3.3e-109
XP_016871298 (OMIM: 602478) PREDICTED: tRNA (cytos ( 286) 1699 392.9 5e-109
XP_016871289 (OMIM: 602478) PREDICTED: tRNA (cytos ( 338) 1634 378.3 1.5e-104
XP_016871290 (OMIM: 602478) PREDICTED: tRNA (cytos ( 331) 1515 351.4 1.9e-96
XP_016871299 (OMIM: 602478) PREDICTED: tRNA (cytos ( 284) 1510 350.2 3.6e-96
NP_001305660 (OMIM: 126375,604121,614116) DNA (cyt (1511) 162 46.0 0.00072
NP_001370 (OMIM: 126375,604121,614116) DNA (cytosi (1616) 162 46.0 0.00076
NP_001305659 (OMIM: 126375,604121,614116) DNA (cyt (1619) 162 46.0 0.00076
NP_001124295 (OMIM: 126375,604121,614116) DNA (cyt (1632) 162 46.0 0.00077
>>NP_004403 (OMIM: 602478) tRNA (cytosine(38)-C(5))-meth (391 aa)
initn: 2543 init1: 2543 opt: 2543 Z-score: 3107.0 bits: 583.7 E(85289): 2.5e-166
Smith-Waterman score: 2543; 99.7% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KE1 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLYILDILPRLQKLPKYILLEN
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_004 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
310 320 330 340 350 360
370 380 390
pF1KE1 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
:::::::::::::::::::::::::::::::
NP_004 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
370 380 390
>>XP_006717451 (OMIM: 602478) PREDICTED: tRNA (cytosine( (384 aa)
initn: 1918 init1: 1918 opt: 2469 Z-score: 3016.7 bits: 567.0 E(85289): 2.7e-161
Smith-Waterman score: 2469; 98.0% identity (98.2% similar) in 391 aa overlap (1-391:1-384)
10 20 30 40 50 60
pF1KE1 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLYILDILPRLQKLPKYILLEN
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_006 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_006 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRR-------YGSY
250 260 270 280 290
310 320 330 340 350 360
pF1KE1 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
300 310 320 330 340 350
370 380 390
pF1KE1 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
:::::::::::::::::::::::::::::::
XP_006 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
360 370 380
>>XP_005252429 (OMIM: 602478) PREDICTED: tRNA (cytosine( (377 aa)
initn: 2350 init1: 2350 opt: 2350 Z-score: 2871.5 bits: 540.1 E(85289): 3.3e-153
Smith-Waterman score: 2350; 97.0% identity (97.8% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KE1 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLYILDILPRLQKLPKYILLEN
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_005 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFDE
310 320 330 340 350 360
370 380 390
pF1KE1 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
: .: . ::
XP_005 QSDILLKTEKRLTIQLK
370
>>XP_005252431 (OMIM: 602478) PREDICTED: tRNA (cytosine( (359 aa)
initn: 2345 init1: 2345 opt: 2345 Z-score: 2865.8 bits: 538.9 E(85289): 6.9e-153
Smith-Waterman score: 2345; 99.7% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KE1 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLYILDILPRLQKLPKYILLEN
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
XP_005 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFG
310 320 330 340 350
370 380 390
pF1KE1 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
>>XP_016871292 (OMIM: 602478) PREDICTED: tRNA (cytosine( (320 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2545.3 bits: 479.5 E(85289): 4.9e-135
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 320 aa overlap (72-391:1-320)
50 60 70 80 90 100
pF1KE1 VYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLY
:::::::::::::::::::::::::::::.
XP_016 MILMSPPCQPFTRIGRQGDMTDSRTNSFLH
10 20 30
110 120 130 140 150 160
pF1KE1 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
220 230 240 250 260 270
350 360 370 380 390
pF1KE1 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
280 290 300 310 320
>>XP_016871294 (OMIM: 602478) PREDICTED: tRNA (cytosine( (320 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2545.3 bits: 479.5 E(85289): 4.9e-135
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 320 aa overlap (72-391:1-320)
50 60 70 80 90 100
pF1KE1 VYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLY
:::::::::::::::::::::::::::::.
XP_016 MILMSPPCQPFTRIGRQGDMTDSRTNSFLH
10 20 30
110 120 130 140 150 160
pF1KE1 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
220 230 240 250 260 270
350 360 370 380 390
pF1KE1 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
280 290 300 310 320
>>XP_016871293 (OMIM: 602478) PREDICTED: tRNA (cytosine( (320 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2545.3 bits: 479.5 E(85289): 4.9e-135
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 320 aa overlap (72-391:1-320)
50 60 70 80 90 100
pF1KE1 VYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLY
:::::::::::::::::::::::::::::.
XP_016 MILMSPPCQPFTRIGRQGDMTDSRTNSFLH
10 20 30
110 120 130 140 150 160
pF1KE1 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
220 230 240 250 260 270
350 360 370 380 390
pF1KE1 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
280 290 300 310 320
>>NP_001307936 (OMIM: 602478) tRNA (cytosine(38)-C(5))-m (320 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2545.3 bits: 479.5 E(85289): 4.9e-135
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 320 aa overlap (72-391:1-320)
50 60 70 80 90 100
pF1KE1 VYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLY
:::::::::::::::::::::::::::::.
NP_001 MILMSPPCQPFTRIGRQGDMTDSRTNSFLH
10 20 30
110 120 130 140 150 160
pF1KE1 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
220 230 240 250 260 270
350 360 370 380 390
pF1KE1 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
280 290 300 310 320
>>XP_016871291 (OMIM: 602478) PREDICTED: tRNA (cytosine( (320 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2545.3 bits: 479.5 E(85289): 4.9e-135
Smith-Waterman score: 2082; 99.7% identity (100.0% similar) in 320 aa overlap (72-391:1-320)
50 60 70 80 90 100
pF1KE1 VYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLY
:::::::::::::::::::::::::::::.
XP_016 MILMSPPCQPFTRIGRQGDMTDSRTNSFLH
10 20 30
110 120 130 140 150 160
pF1KE1 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
220 230 240 250 260 270
350 360 370 380 390
pF1KE1 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
280 290 300 310 320
>>XP_016871295 (OMIM: 602478) PREDICTED: tRNA (cytosine( (313 aa)
initn: 1457 init1: 1457 opt: 2008 Z-score: 2455.1 bits: 462.8 E(85289): 5.2e-130
Smith-Waterman score: 2008; 97.5% identity (97.8% similar) in 320 aa overlap (72-391:1-313)
50 60 70 80 90 100
pF1KE1 VYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLY
:::::::::::::::::::::::::::::.
XP_016 MILMSPPCQPFTRIGRQGDMTDSRTNSFLH
10 20 30
110 120 130 140 150 160
pF1KE1 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE1 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQ
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE1 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLD
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE1 IVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
:::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVQPTCRR-------YGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLR
220 230 240 250 260
350 360 370 380 390
pF1KE1 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
270 280 290 300 310
391 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:43:41 2016 done: Sun Nov 6 05:43:42 2016
Total Scan time: 8.360 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]