FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1863, 382 aa
  1>>>pF1KE1863 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.3743+/-0.000401; mu= -20.3626+/- 0.025
 mean_var=418.7556+/-84.596, 0's: 0 Z-trim(124.2): 4  B-trim: 24 in 1/61
 Lambda= 0.062675
 statistics sampled from 45412 (45421) to 45412 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.533), width:  16
 Scan time: 11.130

The best scores are:                                      opt bits E(85289)
NP_570116 (OMIM: 102670) mucosal addressin cell ad ( 382) 2586 247.4 4.2e-65
NP_570118 (OMIM: 102670) mucosal addressin cell ad ( 295) 1483 147.6 3.6e-35


>>NP_570116 (OMIM: 102670) mucosal addressin cell adhesi  (382 aa)
 initn: 2586 init1: 2586 opt: 2586  Z-score: 1289.7  bits: 247.4 E(85289): 4.2e-65
Smith-Waterman score: 2586; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
              310       320       330       340       350       360

              370       380  
pF1KE1 LLPQVSAWAGLRGTGQVGISPS
       ::::::::::::::::::::::
NP_570 LLPQVSAWAGLRGTGQVGISPS
              370       380  

>>NP_570118 (OMIM: 102670) mucosal addressin cell adhesi  (295 aa)
 initn: 1961 init1: 1479 opt: 1483  Z-score: 752.4  bits: 147.6 E(85289): 3.6e-35
Smith-Waterman score: 1791; 77.0% identity (77.2% similar) in 382 aa overlap (1-382:1-295)

               10        20        30        40        50        60
pF1KE1 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MDFGLALLLAGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 SPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHSPTSPEPPDTTSPES
       ::::::::::::::::::::::::::::::::::::::::::                  
NP_570 VLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIP------------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KE1 PDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGP
                                                                   
NP_570 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE1 TQGEVIPTGSSKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
                .::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 ---------ASKPAGDQLPAALWTSSAVLGLLLLALPTYHLWKRCRHLAEDDTHPPASLR
                     230       240       250       260       270   

              370       380  
pF1KE1 LLPQVSAWAGLRGTGQVGISPS
       ::::::::::::::::::::::
NP_570 LLPQVSAWAGLRGTGQVGISPS
           280       290     




382 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:38:26 2016 done: Sun Nov  6 13:38:28 2016
 Total Scan time: 11.130 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]