Result of FASTA (omim) for
pFN21AE1862
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1862, 381 aa
1>>>pF1KE1862 381 - 381 aa - 381 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8526+/-0.000373; mu= 15.0184+/- 0.023
mean_var=98.9718+/-19.417, 0's: 0 Z-trim(115.1): 19 B-trim: 63 in 1/53
Lambda= 0.128919
statistics sampled from 25332 (25351) to 25332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.297), width: 16
Scan time: 8.850
The best scores are: opt bits E(85289)
NP_002843 (OMIM: 602492) pentraxin-related protein ( 381) 2572 488.8 8.7e-138
NP_002514 (OMIM: 600750) neuronal pentraxin-2 prec ( 431) 387 82.5 2.1e-15
NP_002513 (OMIM: 602367) neuronal pentraxin-1 prec ( 432) 361 77.7 5.9e-14
NP_055108 (OMIM: 609474) neuronal pentraxin recept ( 500) 347 75.1 4e-13
NP_001013680 (OMIM: 613442) pentraxin-4 isoform 2 ( 473) 304 67.1 9.8e-11
NP_001315537 (OMIM: 613442) pentraxin-4 isoform 1 ( 478) 304 67.1 9.9e-11
NP_699197 (OMIM: 611691) sushi, von Willebrand fac (3571) 298 66.7 9.8e-10
NP_000558 (OMIM: 123260) C-reactive protein isofor ( 224) 250 56.8 5.9e-08
NP_001315986 (OMIM: 123260) C-reactive protein iso ( 224) 250 56.8 5.9e-08
NP_001630 (OMIM: 104770) serum amyloid P-component ( 223) 225 52.1 1.5e-06
>>NP_002843 (OMIM: 602492) pentraxin-related protein PTX (381 aa)
initn: 2572 init1: 2572 opt: 2572 Z-score: 2594.7 bits: 488.8 E(85289): 8.7e-138
Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)
10 20 30 40 50 60
pF1KE1 MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR
310 320 330 340 350 360
370 380
pF1KE1 GNIVGWGVTEIQPHGGAQYVS
:::::::::::::::::::::
NP_002 GNIVGWGVTEIQPHGGAQYVS
370 380
>>NP_002514 (OMIM: 600750) neuronal pentraxin-2 precurso (431 aa)
initn: 326 init1: 151 opt: 387 Z-score: 397.7 bits: 82.5 E(85289): 2.1e-15
Smith-Waterman score: 387; 29.7% identity (60.7% similar) in 300 aa overlap (85-377:131-416)
60 70 80 90 100 110
pF1KE1 EWDKLFIMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESL-ARPCAPGAPAEAR-
:: :...: : ..: : : :.. :
NP_002 KARGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE
110 120 130 140 150 160
120 130 140 150 160
pF1KE1 -LTSALDELLQATRDAGRRLARMEGAEAQRPEEAG---RALAAVLEELRQTRADLHAVQG
: . : :: :. :..:..: .. .:.. . ..:. : : ..:. .:
NP_002 VLQQRLGEL---ERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELE--RG
170 180 190 200 210
170 180 190 200 210 220
pF1KE1 WAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYG
.: . : . .... :.:.. ..:... . : .: .:. :.:.... . :::.
NP_002 NSAFK-SPDAFKVSL--PLRTNYLYGKIKKTLP-ELYAFTICLWLRSSASPGIGTPFSYA
220 230 240 250 260 270
230 240 250 260 270 280
pF1KE1 TKRNPYEIQLY-LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNG
. . :: : . . : .... . .: .:: :.: :.: ::....:. . .:
NP_002 VPGQANEIVLIEWGNNPIELLINDKVAQL--PLFVSDGKWHHICVTWTTRDGMWEAFQDG
280 290 300 310 320
290 300 310 320 330 340
pF1KE1 ELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEE
: .: ..: : . ::.: .:::.. ::: :: : :: :.:. ::::: :: .:
NP_002 EKLGTGENLAPWHPIKPGGVLILGQEQD--TVGGRFDATQAFVGELSQFNIWDRVLRAQE
330 340 350 360 370 380
350 360 370 380
pF1KE1 IRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS
: . .. : .. :::. : .... :::
NP_002 IVNIANC-STNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL
390 400 410 420 430
>>NP_002513 (OMIM: 602367) neuronal pentraxin-1 precurso (432 aa)
initn: 222 init1: 172 opt: 361 Z-score: 371.5 bits: 77.7 E(85289): 5.9e-14
Smith-Waterman score: 376; 27.6% identity (61.0% similar) in 272 aa overlap (114-377:159-420)
90 100 110 120 130
pF1KE1 ELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQATRDAGRR--LARM----EGA
:..: .:::. : .: :.:. ::
NP_002 TLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGK
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE1 EAQRPEEAGRA-LAAVLEELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSV
. : . :. . ..: :.: ..:. : .. : : . . ::.:.. ....:
NP_002 GGPRNDTEERVKIETALTSLHQRISELEKGQ----KDNRP-GDKFQLTFPLRTNYMYAKV
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE1 HPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLY-LSYQSIVFVVGGEENK
. : .. .:..:.:.:.. . . :::.. . :. : . . . .... . :
NP_002 KKSLP-EMYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKVAK
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE1 LVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKN
: ... :.: :.: ::....:. . .: ... ..: : . :.: .:::..
NP_002 L--PFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQD
310 320 330 340 350 360
320 330 340 350 360 370
pF1KE1 GCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHG
.::::: : :: :.:. ::::: :. :. . . . . ::...:. ..:. .:
NP_002 --TLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYG
370 380 390 400 410
380
pF1KE1 GAQYVS
::
NP_002 GATKWTFEACRQIN
420 430
>>NP_055108 (OMIM: 609474) neuronal pentraxin receptor [ (500 aa)
initn: 198 init1: 97 opt: 347 Z-score: 356.6 bits: 75.1 E(85289): 4e-13
Smith-Waterman score: 356; 28.3% identity (58.3% similar) in 321 aa overlap (72-377:189-486)
50 60 70 80 90
pF1KE1 EDPTPCACGQEHSEWDKLFIMLENSQMRERMLLQATDDV--LRGELQRLREELGRLAESL
..:. : : :: ...::..:: ..
NP_055 GRCESGLPRGLQGAGPRRDTMADGPWDSPALILELEDAVRALRDRIDRLEQELPARVNLS
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE1 ARPCAPGAPAEARLTSALDELLQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQ-
: : :: . . . : : .:.: :. ::.. . : .: ::. .. ::
NP_055 AAP-APVSAVPTGLHSKMDQL------EGQLLAQVLALEKERV-----ALSHSSRRQRQE
220 230 240 250 260
160 170 180 190 200 210
pF1KE1 TRADLHAVQGWAAR------SWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIW
.. .: ..:: .:. .. : : .:.:.. ... :. . : .: .:.::.:
NP_055 VEKELDVLQGRVAELEHGSSAYSPPDA-FKISIPIRNNYMYARVRKALP-ELYAFTACMW
270 280 290 300 310 320
220 230 240 250 260
pF1KE1 VKA-TDVLNKTILFSYGTKRNPYEIQLYLS-YQSIVFVVGGEENKLVAEAMVSL--GRWT
... .. .. :::.. . :: : . .. . ... : ::. .:: . :
NP_055 LRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLI----NDKVAQLPLSLKDNGWH
330 340 350 360 370 380
270 280 290 300 310 320
pF1KE1 HLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLA
:.: .:....:: : . .::: .. ..:. : . ::: .:::.. .:: :: : :
NP_055 HICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQD--TLGGRFDATQA
390 400 410 420 430
330 340 350 360 370 380
pF1KE1 FSGRLTGFNIWDSVLSNEEIRETGGAESCH--IRGNIVGWGVTEIQPHGGAQYVS
: : .. ::.:: .:. .. : .: . ::.. : .. :::
NP_055 FVGDIAQFNLWDHALTPAQVL---GIANCTAPLLGNVLPWEDKLVEAFGGATKAAFDVCK
440 450 460 470 480 490
NP_055 GRAKA
500
>>NP_001013680 (OMIM: 613442) pentraxin-4 isoform 2 [Hom (473 aa)
initn: 286 init1: 154 opt: 304 Z-score: 313.7 bits: 67.1 E(85289): 9.8e-11
Smith-Waterman score: 330; 31.3% identity (53.3% similar) in 319 aa overlap (64-348:126-434)
40 50 60 70 80
pF1KE1 IDNGLHPTEDPTPCACGQEHSEWDKLFIMLENSQMR--ERMLLQATDDVLRGELQRLR--
: ::.: :: .: :.:. : ::.
NP_001 LAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKAQRDALQDSLARLEGL
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE1 --EELGRLAESLAR-PCA-PGA----PAEARLTSALDELLQATRDAGRRLARMEGAEAQR
. .::: .: : : ::. :: . . .:: .. : ....: .:
NP_001 VHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRAASEHR
160 170 180 190 200 210
150 160 170 180
pF1KE1 --PEEAGRALAAVLEELRQTRAD-LHAV-QGWAAR-----SWLPA------GCETAILFP
:... .: :. :. :. : : .: : . .: : : ...::
NP_001 GPPQDS----SAPLQGRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFP
220 230 240 250 260 270
190 200 210 220 230
pF1KE1 MRSKK--IFGSVHPVRPMRLESFSACIWVK-ATDVLNKTILFSYGTKRNPYEIQLY----
: . .: : : .: :: : ::. :. :. :.::.:. : .. :.
NP_001 NASTRNVVFLSPGFVTALRALSF--CSWVRTASGRLG--TLLSYATEDNDNKLVLHGRDS
280 290 300 310 320
240 250 260 270 280 290
pF1KE1 LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATG
: :: ::.: . . .. :.: :.: :.: .: : :. .:.:: .. :
NP_001 LLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREG
330 340 350 360 370 380
300 310 320 330 340 350
pF1KE1 HIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHI
. .: :: : .:::... :::::: . :: : ..:. ::: .: :.
NP_001 YEIPPGGSLVLGQEQDS--VGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPT
390 400 410 420 430 440
360 370 380
pF1KE1 RGNIVGWGVTEIQPHGGAQYVS
NP_001 GAILTLANAALAGGFVQGANCTCLERCP
450 460 470
>>NP_001315537 (OMIM: 613442) pentraxin-4 isoform 1 prec (478 aa)
initn: 286 init1: 154 opt: 304 Z-score: 313.6 bits: 67.1 E(85289): 9.9e-11
Smith-Waterman score: 330; 31.3% identity (53.3% similar) in 319 aa overlap (64-348:131-439)
40 50 60 70 80
pF1KE1 IDNGLHPTEDPTPCACGQEHSEWDKLFIMLENSQMR--ERMLLQATDDVLRGELQRLR--
: ::.: :: .: :.:. : ::.
NP_001 LAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKAQRDALQDSLARLEGL
110 120 130 140 150 160
90 100 110 120 130 140
pF1KE1 --EELGRLAESLAR-PCA-PGA----PAEARLTSALDELLQATRDAGRRLARMEGAEAQR
. .::: .: : : ::. :: . . .:: .. : ....: .:
NP_001 VHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRAASEHR
170 180 190 200 210 220
150 160 170 180
pF1KE1 --PEEAGRALAAVLEELRQTRAD-LHAV-QGWAAR-----SWLPA------GCETAILFP
:... .: :. :. :. : : .: : . .: : : ...::
NP_001 GPPQDS----SAPLQGRREPPASGSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFP
230 240 250 260 270
190 200 210 220 230
pF1KE1 MRSKK--IFGSVHPVRPMRLESFSACIWVK-ATDVLNKTILFSYGTKRNPYEIQLY----
: . .: : : .: :: : ::. :. :. :.::.:. : .. :.
NP_001 NASTRNVVFLSPGFVTALRALSF--CSWVRTASGRLG--TLLSYATEDNDNKLVLHGRDS
280 290 300 310 320 330
240 250 260 270 280 290
pF1KE1 LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATG
: :: ::.: . . .. :.: :.: :.: .: : :. .:.:: .. :
NP_001 LLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREG
340 350 360 370 380 390
300 310 320 330 340 350
pF1KE1 HIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHI
. .: :: : .:::... :::::: . :: : ..:. ::: .: :.
NP_001 YEIPPGGSLVLGQEQDS--VGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPT
400 410 420 430 440 450
360 370 380
pF1KE1 RGNIVGWGVTEIQPHGGAQYVS
NP_001 GAILTLANAALAGGFVQGANCTCLERCP
460 470
>>NP_699197 (OMIM: 611691) sushi, von Willebrand factor (3571 aa)
initn: 244 init1: 142 opt: 298 Z-score: 295.8 bits: 66.7 E(85289): 9.8e-10
Smith-Waterman score: 298; 30.1% identity (64.5% similar) in 166 aa overlap (204-366:1448-1608)
180 190 200 210 220 230
pF1KE1 WLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNP
:.... .:.:..: .: .::.. .
NP_699 CETEQSTGFNLDFEVSGIYGYVMLDGMLPSLHALTCTFWMKSSDDMNYGTPISYAVDNGS
1420 1430 1440 1450 1460 1470
240 250 260 270 280 290
pF1KE1 YEIQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATT
. : .:.. :. :.:.: :.. :. ::: :. ::.: .:. .....:.:.
NP_699 DNTLLLTDYNGWVLYVNGRE-KITNCPSVNDGRWHHIAITWTSANGIWKVYIDGKLSDGG
1480 1490 1500 1510 1520 1530
300 310 320 330 340 350
pF1KE1 VEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGG
. ...: .: :: : .:::.. : ::. . .: : .. .:.:: ::: ....
NP_699 AGLSVGLPIPGGGALVLGQEQDKK--GEGFSPAESFVGSISQLNLWDYVLSPQQVKSL--
1540 1550 1560 1570 1580 1590
360 370 380
pF1KE1 AESCH---IRGNIVGWGVTEIQPHGGAQYVS
: :: .::...:
NP_699 ATSCPEELSKGNVLAWPDFLSGIVGKVKIDSKSIFCSDCPRLGGSVPHLRTASEDLKPGS
1600 1610 1620 1630 1640 1650
>>NP_000558 (OMIM: 123260) C-reactive protein isoform 1 (224 aa)
initn: 125 init1: 83 opt: 250 Z-score: 263.8 bits: 56.8 E(85289): 5.9e-08
Smith-Waterman score: 250; 28.5% identity (60.0% similar) in 200 aa overlap (182-375:26-214)
160 170 180 190 200 210
pF1KE1 VLEELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACI
:..:: .: . :.. :..:..:.
NP_000 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCL
10 20 30 40 50
220 230 240 250 260
pF1KE1 --WVKATDVLNKTILFSYGTKRNPYEIQLYLSYQ-SIVFVVGGEENKL-VAEAMVSLGRW
... ... . .: :::.:::. :: .. : . . :.::: : . : :. :.
NP_000 HFYTELSSTRGYSI-FSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAP---
60 70 80 90 100 110
270 280 290 300 310 320
pF1KE1 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL
.:.: .:.: :.. .::.:. . . :. : . . .:::... ::.:. .
NP_000 VHICTSWESASGIVEFWVDGK-PRVRKSLKKGYTVGAEASIILGQEQDS--FGGNFEGSQ
120 130 140 150 160
330 340 350 360 370 380
pF1KE1 AFSGRLTGFNIWDSVLSNEEIRET--GGAESCHIRGNIVGWGVTEIQPHGGAQYVS
.. : . . :.:: ::: .:: :: : :...: . . . .:
NP_000 SLVGDIGNVNMWDFVLSPDEINTIYLGGPFS----PNVLNWRALKYEVQGEVFTKPQLWP
170 180 190 200 210 220
>>NP_001315986 (OMIM: 123260) C-reactive protein isoform (224 aa)
initn: 125 init1: 83 opt: 250 Z-score: 263.8 bits: 56.8 E(85289): 5.9e-08
Smith-Waterman score: 250; 28.5% identity (60.0% similar) in 200 aa overlap (182-375:26-214)
160 170 180 190 200 210
pF1KE1 VLEELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACI
:..:: .: . :.. :..:..:.
NP_001 MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCL
10 20 30 40 50
220 230 240 250 260
pF1KE1 --WVKATDVLNKTILFSYGTKRNPYEIQLYLSYQ-SIVFVVGGEENKL-VAEAMVSLGRW
... ... . .: :::.:::. :: .. : . . :.::: : . : :. :.
NP_001 HFYTELSSTRGYSI-FSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAP---
60 70 80 90 100 110
270 280 290 300 310 320
pF1KE1 THLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETL
.:.: .:.: :.. .::.:. . . :. : . . .:::... ::.:. .
NP_001 VHICTSWESASGIVEFWVDGK-PRVRKSLKKGYTVGAEASIILGQEQDS--FGGNFEGSQ
120 130 140 150 160
330 340 350 360 370 380
pF1KE1 AFSGRLTGFNIWDSVLSNEEIRET--GGAESCHIRGNIVGWGVTEIQPHGGAQYVS
.. : . . :.:: ::: .:: :: : :...: . . . .:
NP_001 SLVGDIGNVNMWDFVLSPDEINTIYLGGPFS----PNVLNWRALKYEVQGEVFTKPQLWP
170 180 190 200 210 220
>>NP_001630 (OMIM: 104770) serum amyloid P-component pre (223 aa)
initn: 110 init1: 91 opt: 225 Z-score: 238.7 bits: 52.1 E(85289): 1.5e-06
Smith-Waterman score: 225; 25.1% identity (60.0% similar) in 195 aa overlap (184-375:29-213)
160 170 180 190 200 210
pF1KE1 EELRQTRADLHAVQGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMR--LESFSACI
.:: .: . :. . :.. :..:. :.
NP_001 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRES--VTDHVNLITPLEKPLQNFTLCF
10 20 30 40 50
220 230 240 250 260 270
pF1KE1 WVKATDVLNKTI-LFSYGTKRNPYEIQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHL
.: . :... ::::.:. :. .: . . :. .:...... .. .:.
NP_001 --RAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGR-HKVTSKVIEKFPAPVHI
60 70 80 90 100 110
280 290 300 310 320 330
pF1KE1 CGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFS
: .:.: :.. .:.:: . . :..: . .:::... :: ::.. .:
NP_001 CVSWESSSGIAEFWINGT-PLVKKGLRQGYFVEAQPKIVLGQEQDS--YGGKFDRSQSFV
120 130 140 150 160 170
340 350 360 370 380
pF1KE1 GRLTGFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS
:.. . .::::: :.: .. .. . .::. : . . . .:
NP_001 GEIGDLYMWDSVLPPENI--LSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV
180 190 200 210 220
381 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:12:06 2016 done: Sun Nov 6 21:12:08 2016
Total Scan time: 8.850 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]