Result of FASTA (omim) for
pFN21AE1849
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1849, 365 aa
1>>>pF1KE1849 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2422+/-0.000295; mu= 17.8725+/- 0.018
mean_var=77.9863+/-15.889, 0's: 0 Z-trim(119.2): 7 B-trim: 581 in 2/51
Lambda= 0.145233
statistics sampled from 33004 (33011) to 33004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.387), width: 16
Scan time: 7.000
The best scores are: opt bits E(85289)
XP_005248007 (OMIM: 614309) PREDICTED: probable tR ( 516) 2593 552.4 8.1e-157
XP_011511711 (OMIM: 614309) PREDICTED: probable tR ( 516) 2593 552.4 8.1e-157
XP_011511710 (OMIM: 614309) PREDICTED: probable tR ( 528) 2593 552.4 8.3e-157
NP_689757 (OMIM: 614309) probable tRNA (uracil-O(2 ( 757) 2593 552.6 1.1e-156
XP_011511709 (OMIM: 614309) PREDICTED: probable tR ( 713) 2028 434.2 4.5e-121
XP_011511708 (OMIM: 614309) PREDICTED: probable tR ( 743) 1782 382.6 1.5e-105
>>XP_005248007 (OMIM: 614309) PREDICTED: probable tRNA ( (516 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 2936.3 bits: 552.4 E(85289): 8.1e-157
Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:152-516)
10 20 30
pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
::::::::::::::::::::::::::::::
XP_005 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
130 140 150 160 170 180
40 50 60 70 80 90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
190 200 210 220 230 240
100 110 120 130 140 150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
250 260 270 280 290 300
160 170 180 190 200 210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
310 320 330 340 350 360
220 230 240 250 260 270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
370 380 390 400 410 420
280 290 300 310 320 330
pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
430 440 450 460 470 480
340 350 360
pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
:::::::::::::::::::::::::::::::::::
XP_005 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
490 500 510
>>XP_011511711 (OMIM: 614309) PREDICTED: probable tRNA ( (516 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 2936.3 bits: 552.4 E(85289): 8.1e-157
Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:152-516)
10 20 30
pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
::::::::::::::::::::::::::::::
XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
130 140 150 160 170 180
40 50 60 70 80 90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
190 200 210 220 230 240
100 110 120 130 140 150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
250 260 270 280 290 300
160 170 180 190 200 210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
310 320 330 340 350 360
220 230 240 250 260 270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
370 380 390 400 410 420
280 290 300 310 320 330
pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
430 440 450 460 470 480
340 350 360
pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
:::::::::::::::::::::::::::::::::::
XP_011 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
490 500 510
>>XP_011511710 (OMIM: 614309) PREDICTED: probable tRNA ( (528 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 2936.2 bits: 552.4 E(85289): 8.3e-157
Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:164-528)
10 20 30
pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
::::::::::::::::::::::::::::::
XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
140 150 160 170 180 190
40 50 60 70 80 90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
200 210 220 230 240 250
100 110 120 130 140 150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
260 270 280 290 300 310
160 170 180 190 200 210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
320 330 340 350 360 370
220 230 240 250 260 270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
380 390 400 410 420 430
280 290 300 310 320 330
pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
440 450 460 470 480 490
340 350 360
pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
:::::::::::::::::::::::::::::::::::
XP_011 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
500 510 520
>>NP_689757 (OMIM: 614309) probable tRNA (uracil-O(2)-)- (757 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 2934.1 bits: 552.6 E(85289): 1.1e-156
Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:393-757)
10 20 30
pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
::::::::::::::::::::::::::::::
NP_689 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
370 380 390 400 410 420
40 50 60 70 80 90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
430 440 450 460 470 480
100 110 120 130 140 150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
490 500 510 520 530 540
160 170 180 190 200 210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
550 560 570 580 590 600
220 230 240 250 260 270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
610 620 630 640 650 660
280 290 300 310 320 330
pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
670 680 690 700 710 720
340 350 360
pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
:::::::::::::::::::::::::::::::::::
NP_689 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS
730 740 750
>>XP_011511709 (OMIM: 614309) PREDICTED: probable tRNA ( (713 aa)
initn: 2026 init1: 2026 opt: 2028 Z-score: 2294.6 bits: 434.2 E(85289): 4.5e-121
Smith-Waterman score: 2028; 97.0% identity (98.7% similar) in 300 aa overlap (1-297:393-692)
10 20 30
pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
::::::::::::::::::::::::::::::
XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
370 380 390 400 410 420
40 50 60 70 80 90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
430 440 450 460 470 480
100 110 120 130 140 150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
490 500 510 520 530 540
160 170 180 190 200 210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
550 560 570 580 590 600
220 230 240 250 260 270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
610 620 630 640 650 660
280 290 300 310 320
pF1KE1 KRECGGLQTLLRNSHQVFQ---VVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLC
::::::::::::::::::: ... :.:.
XP_011 KRECGGLQTLLRNSHQVFQGLPLTSRRAHLPRPCLKTHPIPQSLPLEADSL
670 680 690 700 710
>>XP_011511708 (OMIM: 614309) PREDICTED: probable tRNA ( (743 aa)
initn: 1782 init1: 1782 opt: 1782 Z-score: 2015.8 bits: 382.6 E(85289): 1.5e-105
Smith-Waterman score: 1782; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:393-642)
10 20 30
pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN
::::::::::::::::::::::::::::::
XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN
370 380 390 400 410 420
40 50 60 70 80 90
pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC
430 440 450 460 470 480
100 110 120 130 140 150
pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS
490 500 510 520 530 540
160 170 180 190 200 210
pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA
550 560 570 580 590 600
220 230 240 250 260 270
pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL
::::::::::::::::::::::::::::::::::::::::
XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGVLGTGEEHGAPSPPGPSVGD
610 620 630 640 650 660
280 290 300 310 320 330
pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF
XP_011 FCLAAHLRETLLLQALLSSPMNVGTKSYPFPSSSFVLLYHVYVGWDRAMEHRRPLQKSFE
670 680 690 700 710 720
365 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:33:36 2016 done: Sun Nov 6 17:33:37 2016
Total Scan time: 7.000 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]