FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1845, 361 aa
  1>>>pF1KE1845 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8417+/-0.00075; mu= 11.5389+/- 0.046
 mean_var=145.3222+/-29.167, 0's: 0 Z-trim(114.0): 12  B-trim: 0 in 0/52
 Lambda= 0.106392
 statistics sampled from 14545 (14552) to 14545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.447), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS6516.1 CAAP1 gene_id:79886|Hs108|chr9          ( 361) 2341 370.4 1.4e-102
CCDS55299.1 CAAP1 gene_id:79886|Hs108|chr9         ( 216) 1400 225.7 2.9e-59


>>CCDS6516.1 CAAP1 gene_id:79886|Hs108|chr9               (361 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 1955.2  bits: 370.4 E(32554): 1.4e-102
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE1 MTGKKSSREKRRKRSSQEAAAALAAPDIVPALASGSSGSTSGCGSAGGCGSVSCCGNANF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MTGKKSSREKRRKRSSQEAAAALAAPDIVPALASGSSGSTSGCGSAGGCGSVSCCGNANF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SGSVTGGGSGGSCWGGSSVERSERRKRRSTDSSSVSGSLQQETKYILPTLEKELFLAEHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SGSVTGGGSGGSCWGGSSVERSERRKRRSTDSSSVSGSLQQETKYILPTLEKELFLAEHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DLEEGGLDLTVSLKPVSFYISDKKEMLQQCFCIIGEKKLQKMLPDVLKNCSIEEIKKLCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 DLEEGGLDLTVSLKPVSFYISDKKEMLQQCFCIIGEKKLQKMLPDVLKNCSIEEIKKLCQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EQLELLSEKKILKILEGDNGMDSDMEEEADDGSKMGSDLVSQQDICIDSASSVRENKQPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EQLELLSEKKILKILEGDNGMDSDMEEEADDGSKMGSDLVSQQDICIDSASSVRENKQPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GLELKQGKGEDSDVLSINADAYDSDIEGPCNEEAAAPEAPENTVQSEAGQIDDLEKDIEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GLELKQGKGEDSDVLSINADAYDSDIEGPCNEEAAAPEAPENTVQSEAGQIDDLEKDIEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SVNEILGLAESSPNEPKAATLAVPPPEDVQPSAQQLELLELEMRARAIKALMKAGDIKKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SVNEILGLAESSPNEPKAATLAVPPPEDVQPSAQQLELLELEMRARAIKALMKAGDIKKP
              310       320       330       340       350       360

        
pF1KE1 A
       :
CCDS65 A
        

>>CCDS55299.1 CAAP1 gene_id:79886|Hs108|chr9              (216 aa)
 initn: 1400 init1: 1400 opt: 1400  Z-score: 1177.5  bits: 225.7 E(32554): 2.9e-59
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 216 aa overlap (146-361:1-216)

         120       130       140       150       160       170     
pF1KE1 LAEHSDLEEGGLDLTVSLKPVSFYISDKKEMLQQCFCIIGEKKLQKMLPDVLKNCSIEEI
                                     ::::::::::::::::::::::::::::::
CCDS55                               MLQQCFCIIGEKKLQKMLPDVLKNCSIEEI
                                             10        20        30

         180       190       200       210       220       230     
pF1KE1 KKLCQEQLELLSEKKILKILEGDNGMDSDMEEEADDGSKMGSDLVSQQDICIDSASSVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KKLCQEQLELLSEKKILKILEGDNGMDSDMEEEADDGSKMGSDLVSQQDICIDSASSVRE
               40        50        60        70        80        90

         240       250       260       270       280       290     
pF1KE1 NKQPEGLELKQGKGEDSDVLSINADAYDSDIEGPCNEEAAAPEAPENTVQSEAGQIDDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NKQPEGLELKQGKGEDSDVLSINADAYDSDIEGPCNEEAAAPEAPENTVQSEAGQIDDLE
              100       110       120       130       140       150

         300       310       320       330       340       350     
pF1KE1 KDIEKSVNEILGLAESSPNEPKAATLAVPPPEDVQPSAQQLELLELEMRARAIKALMKAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KDIEKSVNEILGLAESSPNEPKAATLAVPPPEDVQPSAQQLELLELEMRARAIKALMKAG
              160       170       180       190       200       210

         360 
pF1KE1 DIKKPA
       ::::::
CCDS55 DIKKPA
             




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:48:13 2016 done: Sun Nov  6 15:48:13 2016
 Total Scan time:  2.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]