FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1844, 361 aa
  1>>>pF1KE1844 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4335+/-0.000906; mu= 13.2599+/- 0.055
 mean_var=136.1372+/-26.529, 0's: 0 Z-trim(110.9): 23  B-trim: 0 in 0/51
 Lambda= 0.109922
 statistics sampled from 11967 (11973) to 11967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.368), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS53308.1 EBNA1BP2 gene_id:10969|Hs108|chr1      ( 361) 2404 392.4 3.2e-109
CCDS478.1 EBNA1BP2 gene_id:10969|Hs108|chr1        ( 306) 2020 331.4 6.1e-91


>>CCDS53308.1 EBNA1BP2 gene_id:10969|Hs108|chr1           (361 aa)
 initn: 2404 init1: 2404 opt: 2404  Z-score: 2074.3  bits: 392.4 E(32554): 3.2e-109
Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE1 MYPEALPVGILSNPDTFKRRSGSYSNDKPEVWFAAGSGSPNQKLSSSCVGRACGEMDTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MYPEALPVGILSNPDTFKRRSGSYSNDKPEVWFAAGSGSPNQKLSSSCVGRACGEMDTPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LSDSESESDESLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLAEFKRDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LSDSESESDESLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLAEFKRDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WVERLDVTLGPVPEIGGSEAPAPQNKDQKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WVERLDVTLGPVPEIGGSEAPAPQNKDQKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 QKRQQEKAHMMNAIKKYQKGFSDKLDFLEGDQKPLAQHKKAGAKGQQMRKGPSAKRRYKN
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS53 QKRQQEKAHMMNAIKKYQKGFSDKLDFLEGDQKPLAQRKKAGAKGQQMRKGPSAKRRYKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QKFGFGGKKKGSKWNTRESYDDVSSFRAKTAHGRGLKRPGKKGSNKRPGKRTREKMKNRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QKFGFGGKKKGSKWNTRESYDDVSSFRAKTAHGRGLKRPGKKGSNKRPGKRTREKMKNRT
              310       320       330       340       350       360

        
pF1KE1 H
       :
CCDS53 H
        

>>CCDS478.1 EBNA1BP2 gene_id:10969|Hs108|chr1             (306 aa)
 initn: 2020 init1: 2020 opt: 2020  Z-score: 1746.1  bits: 331.4 E(32554): 6.1e-91
Smith-Waterman score: 2020; 99.7% identity (100.0% similar) in 306 aa overlap (56-361:1-306)

          30        40        50        60        70        80     
pF1KE1 NDKPEVWFAAGSGSPNQKLSSSCVGRACGEMDTPPLSDSESESDESLVTDRELQDAFSRG
                                     ::::::::::::::::::::::::::::::
CCDS47                               MDTPPLSDSESESDESLVTDRELQDAFSRG
                                             10        20        30

          90       100       110       120       130       140     
pF1KE1 LLKPGLNVVLEGPKKAVNDVNGLKQCLAEFKRDLEWVERLDVTLGPVPEIGGSEAPAPQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLKPGLNVVLEGPKKAVNDVNGLKQCLAEFKRDLEWVERLDVTLGPVPEIGGSEAPAPQN
               40        50        60        70        80        90

         150       160       170       180       190       200     
pF1KE1 KDQKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KDQKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKI
              100       110       120       130       140       150

         210       220       230       240       250       260     
pF1KE1 RQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKYQKGFSDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKYQKGFSDKL
              160       170       180       190       200       210

         270       280       290       300       310       320     
pF1KE1 DFLEGDQKPLAQHKKAGAKGQQMRKGPSAKRRYKNQKFGFGGKKKGSKWNTRESYDDVSS
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DFLEGDQKPLAQRKKAGAKGQQMRKGPSAKRRYKNQKFGFGGKKKGSKWNTRESYDDVSS
              220       230       240       250       260       270

         330       340       350       360 
pF1KE1 FRAKTAHGRGLKRPGKKGSNKRPGKRTREKMKNRTH
       ::::::::::::::::::::::::::::::::::::
CCDS47 FRAKTAHGRGLKRPGKKGSNKRPGKRTREKMKNRTH
              280       290       300      




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:30:06 2016 done: Sun Nov  6 21:30:07 2016
 Total Scan time:  3.070 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]