Result of FASTA (ccds) for
pFN21AE1827
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1827, 345 aa
1>>>pF1KE1827 345 - 345 aa - 345 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2286+/-0.000771; mu= 17.1820+/- 0.046
mean_var=72.9950+/-14.435, 0's: 0 Z-trim(109.1): 77 B-trim: 270 in 2/49
Lambda= 0.150116
statistics sampled from 10592 (10672) to 10592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.328), width: 16
Scan time: 2.430
The best scores are: opt bits E(32554)
CCDS3795.1 PDGFC gene_id:56034|Hs108|chr4 ( 345) 2388 526.1 1.6e-149
CCDS8326.1 PDGFD gene_id:80310|Hs108|chr11 ( 364) 575 133.5 2.6e-31
CCDS41703.1 PDGFD gene_id:80310|Hs108|chr11 ( 370) 575 133.5 2.7e-31
>>CCDS3795.1 PDGFC gene_id:56034|Hs108|chr4 (345 aa)
initn: 2388 init1: 2388 opt: 2388 Z-score: 2797.9 bits: 526.1 E(32554): 1.6e-149
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KE1 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSNKEQNGVQDPQHERIITVSTNGSIHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSNKEQNGVQDPQHERIITVSTNGSIHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGTIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 PRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGTIL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAVSPSVLPPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 GRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAVSPSVLPPSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVDLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVDLNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 LTEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LTEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCGGNCACCLHNCNECQCVPSK
250 260 270 280 290 300
310 320 330 340
pF1KE1 VTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDCVCRGSTGG
:::::::::::::::::::::::::::::::::::::::::::::
CCDS37 VTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDCVCRGSTGG
310 320 330 340
>>CCDS8326.1 PDGFD gene_id:80310|Hs108|chr11 (364 aa)
initn: 906 init1: 332 opt: 575 Z-score: 675.5 bits: 133.5 E(32554): 2.6e-31
Smith-Waterman score: 968; 43.5% identity (69.8% similar) in 361 aa overlap (3-339:5-358)
10 20 30 40 50
pF1KE1 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSNKEQNGVQDPQHERIITVSTNGSI
.: :. . . . :. . . .. : : ..: ... . .... : :. :: .
CCDS83 MHRLIFVYTLICANFCSCRDTSATPQSASIKALRNANLRRDDLY--RRDETIQVKGNGYV
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 HSPRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEPSDGT
.:::::..:::: .:.::: . .::. :::.::..::::. :.:::.:::::::. :. .
CCDS83 QSPRFPNSYPRNLLLTWRLHS-QENTRIQLVFDNQFGLEEAENDICRYDFVEVEDISETS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 --ILGRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAV-----
: ::::: :: . :. :::.: : ::.:: ..::: :.:.. . .: :.
CCDS83 TIIRGRWCGHKEVPPRIKSRTNQIKITFKSDDYFVAKPGFKIYYSL-LEDFQPAAASETN
120 130 140 150 160 170
180 190 200 210
pF1KE1 --------------SPSVLPPSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYR
:::: :. : : :.. :. :.:.:::..:..:: :: :::..:
CCDS83 WESVTSSISGVSYNSPSVTDPT-LIADALDKKIAEFDTVEDLLKYFNPESWQEDLENMYL
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE1 PTWQLLGKAFVFGRKSRVVDLNLLTEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLV
: . :... :::.: ::. :..... :::::::.::.:::::: ....:.: ::::
CCDS83 DTPRYRGRSY-HDRKSKV-DLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFFPRCLLV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE1 KRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLRP-KTGVRGLHKS--LTDVALEHHEE
.::::::.: : : : .:..::::::::..: . :: :. :.:. :.:::.
CCDS83 QRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTMALVDIQLDHHER
300 310 320 330 340 350
340
pF1KE1 CDCVCRGSTGG
:::.:
CCDS83 CDCICSSRPPR
360
>>CCDS41703.1 PDGFD gene_id:80310|Hs108|chr11 (370 aa)
initn: 906 init1: 332 opt: 575 Z-score: 675.4 bits: 133.5 E(32554): 2.7e-31
Smith-Waterman score: 970; 43.8% identity (69.3% similar) in 365 aa overlap (3-339:5-364)
10 20 30 40 50
pF1KE1 MSLFGLLLLTSALAGQRQGTQAESNLSSKFQFSSN---KEQNGVQD-PQHERIITVST
.: :. . . . :. . . .. : : ..: :.: . : .... : :.
CCDS41 MHRLIFVYTLICANFCSCRDTSATPQSASIKALRNANLRRDESNHLTDLYRRDETIQVKG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 NGSIHSPRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICKYDFVEVEEP
:: ..:::::..:::: .:.::: . .::. :::.::..::::. :.:::.:::::::.
CCDS41 NGYVQSPRFPNSYPRNLLLTWRLHS-QENTRIQLVFDNQFGLEEAENDICRYDFVEVEDI
70 80 90 100 110
120 130 140 150 160 170
pF1KE1 SDGT--ILGRWCGSGTVPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVMPQFTEAV-
:. . : ::::: :: . :. :::.: : ::.:: ..::: :.:.. . .: :.
CCDS41 SETSTIIRGRWCGHKEVPPRIKSRTNQIKITFKSDDYFVAKPGFKIYYSL-LEDFQPAAA
120 130 140 150 160 170
180 190 200 210
pF1KE1 ------------------SPSVLPPSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLE
:::: :. : : :.. :. :.:.:::..:..:: :: :::
CCDS41 SETNWESVTSSISGVSYNSPSVTDPT-LIADALDKKIAEFDTVEDLLKYFNPESWQEDLE
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE1 DLYRPTWQLLGKAFVFGRKSRVVDLNLLTEEVRLYSCTPRNFSVSIREELKRTDTIFWPG
..: : . :... :::.: ::. :..... :::::::.::.:::::: ....:.:
CCDS41 NMYLDTPRYRGRSY-HDRKSKV-DLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFFPR
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE1 CLLVKRCGGNCACCLHNCNECQCVPSKVTKKYHEVLQLRP-KTGVRGLHKS--LTDVALE
::::.::::::.: : : : .:..::::::::..: . :: :. :.:. :.
CCDS41 CLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTMALVDIQLD
300 310 320 330 340 350
340
pF1KE1 HHEECDCVCRGSTGG
:::.:::.:
CCDS41 HHERCDCICSSRPPR
360 370
345 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:18:22 2016 done: Sun Nov 6 17:18:22 2016
Total Scan time: 2.430 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]