FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1825, 341 aa
  1>>>pF1KE1825 341 - 341 aa - 341 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6830+/-0.0011; mu= 14.8686+/- 0.067
 mean_var=73.5368+/-14.653, 0's: 0 Z-trim(102.2): 20  B-trim: 47 in 1/50
 Lambda= 0.149562
 statistics sampled from 6850 (6854) to 6850 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.211), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2          ( 341) 2193 482.7 1.8e-136
CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13        ( 337) 1748 386.7 1.4e-107


>>CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2               (341 aa)
 initn: 2193 init1: 2193 opt: 2193  Z-score: 2563.5  bits: 482.7 E(32554): 1.8e-136
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KE1 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 CTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 CTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQA
              250       260       270       280       290       300

              310       320       330       340 
pF1KE1 KLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA
       :::::::::::::::::::::::::::::::::::::::::
CCDS24 KLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA
              310       320       330       340 

>>CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13             (337 aa)
 initn: 1781 init1: 1642 opt: 1748  Z-score: 2044.6  bits: 386.7 E(32554): 1.4e-107
Smith-Waterman score: 1748; 81.0% identity (94.1% similar) in 337 aa overlap (1-337:4-336)

                  10        20        30        40        50       
pF1KE1    MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGT
          ::. :.::::.::.::: ::...:.:::::   ::..::.:::::.: :::::: ::
CCDS94 MKKMPL-FSKSHKNPAEIVKILKDNLAILEKQD---KKTDKASEEVSKSLQAMKEILCGT
                10        20        30           40        50      

        60        70        80        90       100       110       
pF1KE1 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV
       ::::: ::::::::::::.:::: ::.::::::::::::::.::::::::::::::.:::
CCDS94 NEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTV
         60        70        80        90       100       110      

       120       130       140       150       160       170       
pF1KE1 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST
       ::: .. .::::::::::.:.::: :::::::::::::::::::.:.:: :::.:::.::
CCDS94 EYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELST
        120       130       140       150       160       170      

       180       190       200       210       220       230       
pF1KE1 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL
       :::::::::::::::::::.: :.::::.:: .: .:::::.:::::::::::::::::.
CCDS94 FDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELI
        180       190       200       210       220       230      

       240       250       260       270       280       290       
pF1KE1 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK
       ::::::.::::::::::::::::::::::: :::::::::::::::.:.:::::..::::
CCDS94 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLK
        240       250       260       270       280       290      

       300       310       320       330       340 
pF1KE1 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA
       :: :::::::.::..::.:::: :::.::.:::::::. :    
CCDS94 NQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP   
        300       310       320       330          




341 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:58:57 2016 done: Sun Nov  6 17:58:58 2016
 Total Scan time:  2.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]