Result of FASTA (omim) for
pFN21AE1822
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1822, 335 aa
1>>>pF1KE1822 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7767+/-0.000339; mu= 19.6406+/- 0.021
mean_var=71.1118+/-14.557, 0's: 0 Z-trim(116.1): 140 B-trim: 1827 in 2/52
Lambda= 0.152091
statistics sampled from 26822 (26977) to 26822 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.316), width: 16
Scan time: 8.200
The best scores are: opt bits E(85289)
XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 2320 517.9 1.2e-146
NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 2320 517.9 1.2e-146
XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 1592 358.0 1.1e-98
XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 1592 358.0 1.1e-98
XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 1592 358.0 1.1e-98
NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 1402 316.4 4e-86
NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 1226 277.9 2.4e-74
NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 1212 274.8 2e-73
NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 1165 264.5 2.3e-70
NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 1147 260.5 3.4e-69
NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1143 259.7 6.5e-69
NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 1098 249.8 6.1e-66
XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 1034 235.8 1.1e-61
XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 962 219.9 5.3e-57
NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 962 219.9 5.3e-57
NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 939 214.8 1.7e-55
NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 833 191.6 1.9e-48
XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 833 191.6 1.9e-48
XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 780 179.9 5.4e-45
NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 674 156.7 5.7e-38
NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 663 154.1 2.3e-37
NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 660 153.6 4.7e-37
NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 649 151.0 1.8e-36
XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 498 118.0 2e-26
XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 497 117.8 2.2e-26
XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 497 117.8 2.6e-26
NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 399 95.9 3.8e-20
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 342 83.9 5.3e-16
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 342 83.9 5.4e-16
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 342 83.9 5.4e-16
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 340 83.5 7e-16
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 329 81.1 3.9e-15
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 308 76.5 9.9e-14
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 308 76.5 9.9e-14
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 303 75.3 1.8e-13
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 299 74.4 3e-13
NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 292 72.8 8.1e-13
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 282 70.8 5.1e-12
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 276 69.4 1.2e-11
NP_001172039 (OMIM: 188411) T-cell surface glycopr ( 132) 270 67.7 1.5e-11
NP_001172042 (OMIM: 188411) T-cell surface glycopr ( 144) 270 67.8 1.6e-11
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 272 68.4 1.8e-11
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 262 66.4 1.1e-10
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 261 66.2 1.4e-10
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 260 65.9 1.4e-10
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 260 65.9 1.4e-10
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 260 66.0 1.5e-10
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 258 65.5 2e-10
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 254 64.6 3.6e-10
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 251 63.9 5.5e-10
>>XP_011508427 (OMIM: 188410) PREDICTED: antigen-present (335 aa)
initn: 2320 init1: 2320 opt: 2320 Z-score: 2753.9 bits: 517.9 E(85289): 1.2e-146
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT
250 260 270 280 290 300
310 320 330
pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
:::::::::::::::::::::::::::::::::::
XP_011 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
310 320 330
>>NP_001757 (OMIM: 188410) antigen-presenting glycoprote (335 aa)
initn: 2320 init1: 2320 opt: 2320 Z-score: 2753.9 bits: 517.9 E(85289): 1.2e-146
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT
250 260 270 280 290 300
310 320 330
pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
:::::::::::::::::::::::::::::::::::
NP_001 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
310 320 330
>>XP_005245640 (OMIM: 188410) PREDICTED: antigen-present (231 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1892.7 bits: 358.0 E(85289): 1.1e-98
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 231 aa overlap (105-335:1-231)
80 90 100 110 120 130
pF1KE1 TFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHV
::::::::::::::::::::::::::::::
XP_005 MLRLSYPLELQVSAGCEVHPGNASNNFFHV
10 20 30
140 150 160 170 180 190
pF1KE1 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE1 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE1 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL
160 170 180 190 200 210
320 330
pF1KE1 FLLIVGFTSRFKRQTSYQGVL
:::::::::::::::::::::
XP_005 FLLIVGFTSRFKRQTSYQGVL
220 230
>>XP_011508429 (OMIM: 188410) PREDICTED: antigen-present (231 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1892.7 bits: 358.0 E(85289): 1.1e-98
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 231 aa overlap (105-335:1-231)
80 90 100 110 120 130
pF1KE1 TFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHV
::::::::::::::::::::::::::::::
XP_011 MLRLSYPLELQVSAGCEVHPGNASNNFFHV
10 20 30
140 150 160 170 180 190
pF1KE1 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE1 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE1 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL
160 170 180 190 200 210
320 330
pF1KE1 FLLIVGFTSRFKRQTSYQGVL
:::::::::::::::::::::
XP_011 FLLIVGFTSRFKRQTSYQGVL
220 230
>>XP_006711684 (OMIM: 188410) PREDICTED: antigen-present (231 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1892.7 bits: 358.0 E(85289): 1.1e-98
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 231 aa overlap (105-335:1-231)
80 90 100 110 120 130
pF1KE1 TFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHV
::::::::::::::::::::::::::::::
XP_006 MLRLSYPLELQVSAGCEVHPGNASNNFFHV
10 20 30
140 150 160 170 180 190
pF1KE1 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLES
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE1 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDIL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE1 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLL
160 170 180 190 200 210
320 330
pF1KE1 FLLIVGFTSRFKRQTSYQGVL
:::::::::::::::::::::
XP_006 FLLIVGFTSRFKRQTSYQGVL
220 230
>>NP_001306074 (OMIM: 188410) antigen-presenting glycopr (242 aa)
initn: 1637 init1: 1402 opt: 1402 Z-score: 1667.2 bits: 316.4 E(85289): 4e-86
Smith-Waterman score: 1455; 72.2% identity (72.2% similar) in 335 aa overlap (1-335:1-242)
10 20 30 40 50 60
pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR
::::::::::::::::::::::
NP_001 NGTCPQFVSGLLESGKSELKKQ--------------------------------------
190 200
250 260 270 280 290 300
pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT
:::::
NP_001 -------------------------------------------------------GGSYT
310 320 330
pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
:::::::::::::::::::::::::::::::::::
NP_001 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
210 220 230 240
>>NP_112155 (OMIM: 188411) T-cell surface glycoprotein C (388 aa)
initn: 1241 init1: 871 opt: 1226 Z-score: 1455.8 bits: 277.9 E(85289): 2.4e-74
Smith-Waterman score: 1226; 54.1% identity (78.1% similar) in 342 aa overlap (4-335:3-339)
10 20 30 40 50
pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRL----------FPLRCLQISSFANSSWTRTDGLAWL
:::::. .: .. .:: : . .: :: ::::: ::....: .::
NP_112 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 GELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSY
:.::::.:.. :.: :::::.:.:: :. ..:: .:..: :: . :. : ...: :
NP_112 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 PLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDK
:.:.:. :::.. :: . :...:.::.:.::::: ::::. : . .. .:::.
NP_112 PFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 WTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFY
.: .: ::. :::.:..::.:.:.::::..:::.:::: ::::::::: :::::::::
NP_112 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 PKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQD
:::::: ::::::::.::: ::.::::::::::::::::.:::::::::::::::: :.:
NP_112 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD
240 250 260 270 280 290
300 310 320 330
pF1KE1 IVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
....::: . :: :.:.. :..:..: ::.:.:.: ...:
NP_112 LIIHWGGYSIFLILICLTVIVTLVILVVV--DSRLKKQSSNKNILSPHTPSPVFLMGANT
300 310 320 330 340 350
NP_112 QDTKNSRHQFCLAQVSWIKNRVLKKWKTRLNQLW
360 370 380
>>NP_001036048 (OMIM: 188411) T-cell surface glycoprotei (376 aa)
initn: 1241 init1: 871 opt: 1212 Z-score: 1439.3 bits: 274.8 E(85289): 2e-73
Smith-Waterman score: 1212; 54.5% identity (78.0% similar) in 336 aa overlap (4-329:3-333)
10 20 30 40 50
pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRL----------FPLRCLQISSFANSSWTRTDGLAWL
:::::. .: .. .:: : . .: :: ::::: ::....: .::
NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWL
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 GELQTHSWSNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSY
:.::::.:.. :.: :::::.:.:: :. ..:: .:..: :: . :. : ...: :
NP_001 GDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 PLELQVSAGCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDK
:.:.:. :::.. :: . :...:.::.:.::::: ::::. : . .. .:::.
NP_001 PFEIQILAGCRM---NAPQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 WTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFY
.: .: ::. :::.:..::.:.:.::::..:::.:::: ::::::::: :::::::::
NP_001 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 PKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQD
:::::: ::::::::.::: ::.::::::::::::::::.:::::::::::::::: :.:
NP_001 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD
240 250 260 270 280 290
300 310 320 330
pF1KE1 IVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
....::: . :: :.:.. :..:..: ::.:.:.
NP_001 LIIHWGGYSIFLILICLTVIVTLVILVVVD--SRLKKQSPVFLMGANTQDTKNSRHQFCL
300 310 320 330 340 350
NP_001 AQVSWIKNRVLKKWKTRLNQLW
360 370
>>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa)
initn: 1096 init1: 1096 opt: 1165 Z-score: 1384.4 bits: 264.5 E(85289): 2.3e-70
Smith-Waterman score: 1165; 52.0% identity (80.4% similar) in 327 aa overlap (4-328:1-324)
10 20 30 40 50
pF1KE1 MGCLLFLLL--WALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSW
.::::: :.: . :.:. .. . .. :.:: : :: .. .::..::::.:
NP_001 MLFLLLPLLAVLPGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTW
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 SNDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSA
...:.:. : :::.:.::...:. :. .::. . ....:. :.. ::.:.::..
NP_001 DSNSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 GCEVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQW
:::.: :..:..:...:.::.:..:::..:: : : .. .::::.. . ..
NP_001 GCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 LLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKW
::. :::.:. :::..::..:..::::.::::.:::::::.: ::::::::::::::: :
NP_001 LLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE1 MRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGS
::::::::::: :::::.:: ::::::::.:.::::: :::::::::::::::::::
NP_001 MRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWE-H
240 250 260 270 280 290
300 310 320 330
pF1KE1 YTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
..:.:.: :::.. :: :..:.. :...
NP_001 HSSVGFIILAVIVPLL--LLIGLALWFRKRCFC
300 310 320
>>NP_001307581 (OMIM: 188370) T-cell surface glycoprotei (316 aa)
initn: 1096 init1: 1096 opt: 1147 Z-score: 1363.2 bits: 260.5 E(85289): 3.4e-69
Smith-Waterman score: 1147; 52.2% identity (80.9% similar) in 314 aa overlap (15-328:3-313)
10 20 30 40 50 60
pF1KE1 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
:.:.: .. . .. :.:: : :: .. .::..::::.:..
NP_001 MFAFGGATGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDS
10 20 30 40
70 80 90 100 110 120
pF1KE1 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
.:.:. : :::.:.::...:. :. .::. . ....:. :.. ::.:.::..::
NP_001 NSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
:.: :..:..:...:.::.:..:::..:: : : .. .::::.. . .. ::
NP_001 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE1 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR
. :::.:. :::..::..:..::::.::::.:::::::.: ::::::::::::::: :::
NP_001 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE1 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT
::::::::: :::::.:: ::::::::.:.::::: ::::::::::::::::::: ..
NP_001 GEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWE-HHS
230 240 250 260 270 280
310 320 330
pF1KE1 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
:.:.: :::.. : ::..:.. :...
NP_001 SVGFIILAVIVPL--LLLIGLALWFRKRCFC
290 300 310
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:52:56 2016 done: Sun Nov 6 18:52:58 2016
Total Scan time: 8.200 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]