Result of FASTA (omim) for
pFN21AE1818
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1818, 278 aa
1>>>pF1KE1818 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5110+/-0.000304; mu= 20.1304+/- 0.019
mean_var=68.8917+/-14.100, 0's: 0 Z-trim(117.4): 87 B-trim: 0 in 0/51
Lambda= 0.154522
statistics sampled from 29250 (29345) to 29250 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.344), width: 16
Scan time: 7.290
The best scores are: opt bits E(85289)
XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 1917 435.8 4.2e-122
NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1688 384.8 1.1e-106
XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 1376 315.1 7.7e-86
XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 1375 315.0 9.7e-86
XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 1374 314.7 9.9e-86
NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 1019 235.7 8.8e-62
XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 1019 235.7 9e-62
NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 944 219.0 9.3e-57
XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 915 212.5 8.4e-55
NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 910 211.4 1.8e-54
NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 904 210.0 4.4e-54
NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 899 208.9 9e-54
XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 899 208.9 9e-54
NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 899 209.0 1.1e-53
NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 899 209.0 1.1e-53
NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 780 182.4 9.6e-46
XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 780 182.4 9.6e-46
NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 548 130.6 3.2e-30
NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 496 119.0 8.8e-27
XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 495 118.7 9.9e-27
XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 495 118.7 9.9e-27
XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 495 118.7 9.9e-27
NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 334 82.8 6.3e-16
NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 334 82.9 7.3e-16
NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 334 83.0 7.6e-16
NP_001172042 (OMIM: 188411) T-cell surface glycopr ( 144) 316 78.6 7.3e-15
NP_001172039 (OMIM: 188411) T-cell surface glycopr ( 132) 311 77.5 1.5e-14
NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 300 74.9 6.8e-14
NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 300 75.2 1e-13
NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 300 75.2 1.1e-13
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 214 56.3 9.4e-08
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 214 56.3 9.8e-08
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 214 56.3 9.8e-08
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 182 49.1 1.2e-05
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 179 48.3 1.7e-05
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 163 44.9 0.00025
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 163 44.9 0.00025
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 163 44.9 0.00026
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 160 44.3 0.00041
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 159 44.0 0.00048
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 158 43.8 0.00056
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 158 43.8 0.00056
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 158 43.8 0.0006
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 158 43.8 0.0006
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 151 42.2 0.0016
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 151 42.2 0.0016
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 151 42.3 0.0017
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 151 42.3 0.0018
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 151 42.3 0.0019
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 151 42.3 0.0019
>>XP_011508421 (OMIM: 188360) PREDICTED: T-cell surface (278 aa)
initn: 1917 init1: 1917 opt: 1917 Z-score: 2313.1 bits: 435.8 E(85289): 4.2e-122
Smith-Waterman score: 1917; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
190 200 210 220 230 240
250 260 270
pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
::::::::::::::::::::::::::::::::::::::
XP_011 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
250 260 270
>>NP_001755 (OMIM: 188360) T-cell surface glycoprotein C (333 aa)
initn: 1903 init1: 1676 opt: 1688 Z-score: 2036.2 bits: 384.8 E(85289): 1.1e-106
Smith-Waterman score: 1688; 91.9% identity (94.4% similar) in 270 aa overlap (1-270:1-264)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
190 200 210 220 230 240
250 260 270
pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
:. . :. :. :.:. ::.:
NP_001 GEQEQQGTQ-LGDILPNANWT-----WYLRATLDVADGEAAGLSCRVKHSSLEGQDIILY
250 260 270 280 290
>--
initn: 245 init1: 241 opt: 252 Z-score: 306.1 bits: 64.7 E(85289): 2.6e-10
Smith-Waterman score: 252; 71.2% identity (83.1% similar) in 59 aa overlap (222-278:277-333)
200 210 220 230 240
pF1KE1 LNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHV--SGFYPKPVWVMWMRGNPTSIGSI
: :.: :.. . . ..: ::::::::
NP_001 GTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWR--NPTSIGSI
250 260 270 280 290 300
250 260 270
pF1KE1 VLAIIVPSLLLLLCLALWYMRRRSYQNIP
:::::::::::::::::::::::::::::
NP_001 VLAIIVPSLLLLLCLALWYMRRRSYQNIP
310 320 330
>>XP_016858274 (OMIM: 188360) PREDICTED: T-cell surface (239 aa)
initn: 1376 init1: 1376 opt: 1376 Z-score: 1662.1 bits: 315.1 E(85289): 7.7e-86
Smith-Waterman score: 1376; 99.5% identity (99.5% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
:::::::::::::::::::::: :
XP_016 YETCPRYLLGVLNAGKADLQRQGKMQLSYFLIVGLRSWTEFWAMECVVLEALASSSPDH
190 200 210 220 230
>>XP_016858273 (OMIM: 188360) PREDICTED: T-cell surface (269 aa)
initn: 1374 init1: 1374 opt: 1375 Z-score: 1660.3 bits: 315.0 E(85289): 9.7e-86
Smith-Waterman score: 1375; 95.3% identity (97.7% similar) in 215 aa overlap (1-215:1-214)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
:::::::::::::::::::::: . .. ..: ::
XP_016 YETCPRYLLGVLNAGKADLQRQGH-RVTKGAGESPRASWCQGNEQWKQDPSWVSGHKETK
190 200 210 220 230
250 260 270
pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
XP_016 ALPDLGSHLLLQKKLYSYMEFYSAMKRNGY
240 250 260
>>XP_016858275 (OMIM: 188360) PREDICTED: T-cell surface (220 aa)
initn: 1374 init1: 1374 opt: 1374 Z-score: 1660.2 bits: 314.7 E(85289): 9.9e-86
Smith-Waterman score: 1374; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
::::::::::::::::::::::
XP_016 YETCPRYLLGVLNAGKADLQRQGHIRISHEPSSCLLSHSQ
190 200 210 220
>>NP_001756 (OMIM: 188340) T-cell surface glycoprotein C (333 aa)
initn: 1097 init1: 656 opt: 1019 Z-score: 1230.2 bits: 235.7 E(85289): 8.8e-62
Smith-Waterman score: 1019; 59.0% identity (80.7% similar) in 249 aa overlap (1-248:1-249)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::.: : :::.:.:::.. : : .:::::: ::.:..::. :::::::.:: :::::
NP_001 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
.::: :::. :::::::..:...:: .:: :.::..::.:: :.. :::::.: :::
NP_001 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALII-QYQGIMETVRIL
::::: . .:.. :..:::.:: .:.. :::: :: ::. : :. ::.:. ::: :
NP_001 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 LYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWM
. ::::.:::.:.::: ..:::.::::::: :: : :.: ::::.:::::::::: ::
NP_001 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
190 200 210 220 230 240
240 250 260 270
pF1KE1 RGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
:.. ..:.
NP_001 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
250 260 270 280 290 300
>>XP_005245636 (OMIM: 188340) PREDICTED: T-cell surface (346 aa)
initn: 1063 init1: 656 opt: 1019 Z-score: 1230.0 bits: 235.7 E(85289): 9e-62
Smith-Waterman score: 1019; 59.0% identity (80.7% similar) in 249 aa overlap (1-248:1-249)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::.: : :::.:.:::.. : : .:::::: ::.:..::. :::::::.:: :::::
XP_005 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
.::: :::. :::::::..:...:: .:: :.::..::.:: :.. :::::.: :::
XP_005 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
70 80 90 100 110 120
130 140 150 160 170
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALII-QYQGIMETVRIL
::::: . .:.. :..:::.:: .:.. :::: :: ::. : :. ::.:. ::: :
XP_005 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 LYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWM
. ::::.:::.:.::: ..:::.::::::: :: : :.: ::::.:::::::::: ::
XP_005 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
190 200 210 220 230 240
240 250 260 270
pF1KE1 RGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
:.. ..:.
XP_005 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWAHIR
250 260 270 280 290 300
>>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa)
initn: 992 init1: 911 opt: 944 Z-score: 1139.9 bits: 219.0 E(85289): 9.3e-57
Smith-Waterman score: 944; 52.6% identity (73.3% similar) in 270 aa overlap (1-270:1-263)
10 20 30 40 50 60
pF1KE1 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
::.: . ::::: :: .. ... : :::: .:: : .: :. ::::.::: : :::
NP_001 MLFLLLPLLAVL-PGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDS
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
.:.: .:: :::.::::..: ::: .::. . . .. .: ..:..:::::: .::
NP_001 NSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL
::::: . :::. : : ::.: .: : .: : .:. :..:: .. : : . .. ::
NP_001 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR
.::::..::.:.:::: :::::::::::: :::::::.:::::::::::::::::::::
NP_001 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR
180 190 200 210 220 230
250 260 270
pF1KE1 GNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
:. . :. . :.:: . ::.:
NP_001 GEQEQQGTQR-GDILPS-----ADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLY
240 250 260 270 280 290
>>XP_011508435 (OMIM: 188411) PREDICTED: T-cell surface (333 aa)
initn: 935 init1: 520 opt: 915 Z-score: 1104.9 bits: 212.5 E(85289): 8.4e-55
Smith-Waterman score: 915; 48.6% identity (73.1% similar) in 286 aa overlap (1-277:1-283)
10 20 30 40 50
pF1KE1 MLLLPFQLLAVLFPGGNSE--HAFQG-------PTSFHVIQTSSFTNSTWAQTQGSGWLD
:::: . . .. :: :. .:.:. ::...:::::.: .::...:::::
XP_011 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP
::: ::::. :: ::::::.:::: .:. .:. .:..:. .: . :: ::.::..::
XP_011 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG
:::: .:::... : :: : : :::: .. : ::: .: :::..: .. .:
XP_011 FEIQILAGCRMN---APQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD
130 140 150 160 170
180 190 200 210 220 230
pF1KE1 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP
: : .. :: .::::.: :...::...:.:.:::::::: ::::::::::::::::::::
XP_011 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP
180 190 200 210 220 230
240 250 260 270
pF1KE1 KPVWVMWMRGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
::::::::::. . . .. .. .:..:. . .. : .::
XP_011 KPVWVMWMRGGYSIFLILICLTVIVTLVILVVVDSRLKKQSSNKNILSPHTPSPVFLMGA
240 250 260 270 280 290
XP_011 NTQDTKNSRHQFCLAQVSWIKNRVLKKWKTRLNQLW
300 310 320 330
>>NP_001036050 (OMIM: 188411) T-cell surface glycoprotei (321 aa)
initn: 915 init1: 500 opt: 910 Z-score: 1099.1 bits: 211.4 E(85289): 1.8e-54
Smith-Waterman score: 910; 49.6% identity (73.8% similar) in 282 aa overlap (1-273:1-278)
10 20 30 40 50
pF1KE1 MLLLPFQLLAVLFPGGNSE--HAFQG-------PTSFHVIQTSSFTNSTWAQTQGSGWLD
:::: . . .. :: :. .:.:. ::...:::::.: .::...:::::
NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYP
::: ::::. :: ::::::.:::: .:. .:. .:..:. .: . :: ::.::..::
NP_001 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 FEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQG
:::: .:::.... :: : : :::: .. : ::: .: :::..: .. .:
NP_001 FEIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLD
130 140 150 160 170
180 190 200 210 220 230
pF1KE1 IMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP
: : .. :: .::::.: :...::...:.:.:::::::: ::::::::::::::::::::
NP_001 IKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYP
180 190 200 210 220 230
240 250 260 270
pF1KE1 KPVWVMWMRGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
::::::::::. :: :.. . : :..: .. ....:
NP_001 KPVWVMWMRGG-YSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQ
240 250 260 270 280 290
NP_001 FCLAQVSWIKNRVLKKWKTRLNQLW
300 310 320
278 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:27:55 2016 done: Sun Nov 6 21:27:56 2016
Total Scan time: 7.290 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]