FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1815, 331 aa
  1>>>pF1KE1815 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4525+/-0.000902; mu= 5.3672+/- 0.054
 mean_var=115.1379+/-22.478, 0's: 0 Z-trim(108.9): 23  B-trim: 11 in 1/52
 Lambda= 0.119527
 statistics sampled from 10505 (10514) to 10505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.323), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS118.1 DFFA gene_id:1676|Hs108|chr1             ( 331) 2118 376.1 2.2e-104
CCDS119.1 DFFA gene_id:1676|Hs108|chr1             ( 268) 1669 298.6 3.8e-81


>>CCDS118.1 DFFA gene_id:1676|Hs108|chr1                  (331 aa)
 initn: 2118 init1: 2118 opt: 2118  Z-score: 1987.4  bits: 376.1 E(32554): 2.2e-104
Smith-Waterman score: 2118; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KE1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT
              250       260       270       280       290       300

              310       320       330 
pF1KE1 QSLHSLRSISASKASPPGDLQNPKRARQDPT
       :::::::::::::::::::::::::::::::
CCDS11 QSLHSLRSISASKASPPGDLQNPKRARQDPT
              310       320       330 

>>CCDS119.1 DFFA gene_id:1676|Hs108|chr1                  (268 aa)
 initn: 1669 init1: 1669 opt: 1669  Z-score: 1570.4  bits: 298.6 E(32554): 3.8e-81
Smith-Waterman score: 1669; 99.6% identity (100.0% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KE1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQT
       :::::::::::::::::::::.                                      
CCDS11 ILTALREKQAPELSLSSQDLEVGGNQGH                                
              250       260                                        




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:31:19 2016 done: Sun Nov  6 19:31:19 2016
 Total Scan time:  2.530 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]