FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1810, 327 aa
  1>>>pF1KE1810 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2415+/-0.000371; mu= 16.4902+/- 0.023
 mean_var=68.4172+/-13.814, 0's: 0 Z-trim(114.1): 10  B-trim: 1042 in 1/50
 Lambda= 0.155057
 statistics sampled from 23786 (23796) to 23786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.279), width:  16
 Scan time:  7.250

The best scores are:                                      opt bits E(85289)
NP_115690 (OMIM: 616359) 2-methoxy-6-polyprenyl-1, ( 327) 2212 503.7 2.1e-142
XP_006719702 (OMIM: 616359) PREDICTED: 2-methoxy-6 ( 246) 1653 378.6 7.3e-105


>>NP_115690 (OMIM: 616359) 2-methoxy-6-polyprenyl-1,4-be  (327 aa)
 initn: 2212 init1: 2212 opt: 2212  Z-score: 2677.6  bits: 503.7 E(85289): 2.1e-142
Smith-Waterman score: 2212; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KE1 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM
              250       260       270       280       290       300

              310       320       
pF1KE1 IEDAGFHKVTYESLTSGIVAIHSGFKL
       :::::::::::::::::::::::::::
NP_115 IEDAGFHKVTYESLTSGIVAIHSGFKL
              310       320       

>>XP_006719702 (OMIM: 616359) PREDICTED: 2-methoxy-6-pol  (246 aa)
 initn: 1653 init1: 1653 opt: 1653  Z-score: 2003.6  bits: 378.6 E(85289): 7.3e-105
Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 246 aa overlap (82-327:1-246)

              60        70        80        90       100       110 
pF1KE1 THFGFETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLL
                                     ::::::::::::::::::::::::::::::
XP_006                               MNDMMSLGIHRVWKDLLLWKMHPLPGTQLL
                                             10        20        30

             120       130       140       150       160       170 
pF1KE1 DVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCD
               40        50        60        70        80        90

             180       190       200       210       220       230 
pF1KE1 INKEMLKVGKQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 INKEMLKVGKQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQE
              100       110       120       130       140       150

             240       250       260       270       280       290 
pF1KE1 AHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRF
              160       170       180       190       200       210

             300       310       320       
pF1KE1 PSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL
       ::::::::::::::::::::::::::::::::::::
XP_006 PSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL
              220       230       240      




327 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:25:17 2016 done: Sun Nov  6 12:25:18 2016
 Total Scan time:  7.250 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]