FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1810, 327 aa
  1>>>pF1KE1810 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4678+/-0.000815; mu= 15.0356+/- 0.049
 mean_var=65.7294+/-13.374, 0's: 0 Z-trim(107.3): 16  B-trim: 494 in 1/50
 Lambda= 0.158196
 statistics sampled from 9475 (9480) to 9475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.291), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS31912.1 COQ5 gene_id:84274|Hs108|chr12         ( 327) 2212 513.5 9.2e-146


>>CCDS31912.1 COQ5 gene_id:84274|Hs108|chr12              (327 aa)
 initn: 2212 init1: 2212 opt: 2212  Z-score: 2730.4  bits: 513.5 E(32554): 9.2e-146
Smith-Waterman score: 2212; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KE1 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM
              250       260       270       280       290       300

              310       320       
pF1KE1 IEDAGFHKVTYESLTSGIVAIHSGFKL
       :::::::::::::::::::::::::::
CCDS31 IEDAGFHKVTYESLTSGIVAIHSGFKL
              310       320       




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:25:16 2016 done: Sun Nov  6 12:25:17 2016
 Total Scan time:  2.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]