Result of FASTA (omim) for
pFN21AE1795
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1795, 313 aa
1>>>pF1KE1795 313 - 313 aa - 313 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9102+/-0.000347; mu= 12.6771+/- 0.022
mean_var=73.9938+/-15.160, 0's: 0 Z-trim(114.2): 82 B-trim: 1232 in 1/54
Lambda= 0.149100
statistics sampled from 23865 (23947) to 23865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.281), width: 16
Scan time: 7.210
The best scores are: opt bits E(85289)
NP_003681 (OMIM: 603424,612067) interferon-inducib ( 313) 2078 456.2 3.9e-128
NP_001132989 (OMIM: 603424,612067) interferon-indu ( 302) 1940 426.5 3.3e-119
NP_001132990 (OMIM: 603424,612067) interferon-indu ( 288) 1912 420.5 2e-117
XP_011510365 (OMIM: 603424,612067) PREDICTED: inte ( 228) 1383 306.6 3e-83
XP_011510368 (OMIM: 603424,612067) PREDICTED: inte ( 200) 1331 295.4 6.2e-80
XP_016860648 (OMIM: 603424,612067) PREDICTED: inte ( 200) 1331 295.4 6.2e-80
NP_001303291 (OMIM: 603424,612067) interferon-indu ( 200) 1331 295.4 6.2e-80
XP_006719644 (OMIM: 605053) PREDICTED: RISC-loadin ( 267) 329 80.0 6.1e-15
XP_005269171 (OMIM: 605053) PREDICTED: RISC-loadin ( 345) 329 80.0 7.6e-15
NP_599151 (OMIM: 605053) RISC-loading complex subu ( 345) 329 80.0 7.6e-15
NP_004169 (OMIM: 605053) RISC-loading complex subu ( 345) 329 80.0 7.6e-15
XP_005269172 (OMIM: 605053) PREDICTED: RISC-loadin ( 345) 329 80.0 7.6e-15
NP_599150 (OMIM: 605053) RISC-loading complex subu ( 366) 329 80.0 8e-15
XP_016875400 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14
XP_005269179 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14
XP_011537014 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14
XP_005269177 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14
XP_005269174 (OMIM: 605053) PREDICTED: RISC-loadin ( 256) 315 76.9 4.7e-14
XP_016875399 (OMIM: 605053) PREDICTED: RISC-loadin ( 235) 306 75.0 1.7e-13
NP_001157855 (OMIM: 605920) double-stranded RNA-bi ( 398) 254 63.9 6.2e-10
NP_001157857 (OMIM: 605920) double-stranded RNA-bi ( 473) 254 63.9 7.2e-10
NP_001157856 (OMIM: 605920) double-stranded RNA-bi ( 479) 254 63.9 7.3e-10
NP_055208 (OMIM: 605920) double-stranded RNA-bindi ( 479) 254 63.9 7.3e-10
NP_001157854 (OMIM: 605920) double-stranded RNA-bi ( 504) 254 63.9 7.6e-10
NP_001157853 (OMIM: 605920) double-stranded RNA-bi ( 538) 254 63.9 8.1e-10
NP_001157852 (OMIM: 605920) double-stranded RNA-bi ( 570) 254 64.0 8.5e-10
NP_056656 (OMIM: 127400,146920,615010) double-stra (1181) 186 49.5 4.1e-05
NP_059348 (OMIM: 601716) double-stranded RNA-bindi ( 496) 149 41.3 0.0047
NP_004593 (OMIM: 601716) double-stranded RNA-bindi ( 496) 149 41.3 0.0047
NP_059346 (OMIM: 601716) double-stranded RNA-bindi ( 496) 149 41.3 0.0047
XP_005260584 (OMIM: 601716) PREDICTED: double-stra ( 502) 149 41.3 0.0048
NP_001309856 (OMIM: 601716) double-stranded RNA-bi ( 502) 149 41.3 0.0048
NP_001032405 (OMIM: 601716) double-stranded RNA-bi ( 502) 149 41.3 0.0048
NP_001306063 (OMIM: 601716) double-stranded RNA-bi ( 502) 149 41.3 0.0048
XP_016883517 (OMIM: 601716) PREDICTED: double-stra ( 536) 149 41.4 0.0051
NP_001309860 (OMIM: 601716) double-stranded RNA-bi ( 536) 149 41.4 0.0051
NP_001309857 (OMIM: 601716) double-stranded RNA-bi ( 542) 149 41.4 0.0051
XP_011527317 (OMIM: 601716) PREDICTED: double-stra ( 542) 149 41.4 0.0051
NP_059347 (OMIM: 601716) double-stranded RNA-bindi ( 577) 149 41.4 0.0054
NP_001306064 (OMIM: 601716) double-stranded RNA-bi ( 577) 149 41.4 0.0054
NP_001309859 (OMIM: 601716) double-stranded RNA-bi ( 577) 149 41.4 0.0054
NP_001309858 (OMIM: 601716) double-stranded RNA-bi ( 577) 149 41.4 0.0054
NP_001309861 (OMIM: 601716) double-stranded RNA-bi ( 583) 149 41.4 0.0055
XP_006723928 (OMIM: 601716) PREDICTED: double-stra ( 583) 149 41.4 0.0055
NP_001309862 (OMIM: 601716) double-stranded RNA-bi ( 583) 149 41.4 0.0055
>>NP_003681 (OMIM: 603424,612067) interferon-inducible d (313 aa)
initn: 2078 init1: 2078 opt: 2078 Z-score: 2421.4 bits: 456.2 E(85289): 3.9e-128
Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
250 260 270 280 290 300
310
pF1KE1 NALQYLKIIAERK
:::::::::::::
NP_003 NALQYLKIIAERK
310
>>NP_001132989 (OMIM: 603424,612067) interferon-inducibl (302 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 2261.2 bits: 426.5 E(85289): 3.3e-119
Smith-Waterman score: 1940; 99.3% identity (99.3% similar) in 295 aa overlap (19-313:8-302)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
: :::::::::::::::::::::::::::::::::::::::
NP_001 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30 40
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
230 240 250 260 270 280
310
pF1KE1 NALQYLKIIAERK
:::::::::::::
NP_001 NALQYLKIIAERK
290 300
>>NP_001132990 (OMIM: 603424,612067) interferon-inducibl (288 aa)
initn: 1912 init1: 1912 opt: 1912 Z-score: 2229.0 bits: 420.5 E(85289): 2e-117
Smith-Waterman score: 1912; 100.0% identity (100.0% similar) in 288 aa overlap (26-313:1-288)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
:::::::::::::::::::::::::::::::::::
NP_001 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH
220 230 240 250 260 270
310
pF1KE1 NALQYLKIIAERK
:::::::::::::
NP_001 NALQYLKIIAERK
280
>>XP_011510365 (OMIM: 603424,612067) PREDICTED: interfer (228 aa)
initn: 1383 init1: 1383 opt: 1383 Z-score: 1615.6 bits: 306.6 E(85289): 3e-83
Smith-Waterman score: 1383; 99.0% identity (99.5% similar) in 209 aa overlap (105-313:20-228)
80 90 100 110 120 130
pF1KE1 ITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQEL
. ::::::::::::::::::::::::::::
XP_011 MQVFGELNFFVFSSSKISWLSFAVPDPLMPDPSKQPKNQLNPIGSLQEL
10 20 30 40
140 150 160 170 180 190
pF1KE1 AIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSN
50 60 70 80 90 100
200 210 220 230 240 250
pF1KE1 ISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGF
110 120 130 140 150 160
260 270 280 290 300 310
pF1KE1 NITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
170 180 190 200 210 220
>>XP_011510368 (OMIM: 603424,612067) PREDICTED: interfer (200 aa)
initn: 1331 init1: 1331 opt: 1331 Z-score: 1556.1 bits: 295.4 E(85289): 6.2e-80
Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (114-313:1-200)
90 100 110 120 130 140
pF1KE1 KKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP
::::::::::::::::::::::::::::::
XP_011 MPDPSKQPKNQLNPIGSLQELAIHHGWRLP
10 20 30
150 160 170 180 190 200
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE1 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE
100 110 120 130 140 150
270 280 290 300 310
pF1KE1 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
160 170 180 190 200
>>XP_016860648 (OMIM: 603424,612067) PREDICTED: interfer (200 aa)
initn: 1331 init1: 1331 opt: 1331 Z-score: 1556.1 bits: 295.4 E(85289): 6.2e-80
Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (114-313:1-200)
90 100 110 120 130 140
pF1KE1 KKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP
::::::::::::::::::::::::::::::
XP_016 MPDPSKQPKNQLNPIGSLQELAIHHGWRLP
10 20 30
150 160 170 180 190 200
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE1 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE
100 110 120 130 140 150
270 280 290 300 310
pF1KE1 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
160 170 180 190 200
>>NP_001303291 (OMIM: 603424,612067) interferon-inducibl (200 aa)
initn: 1331 init1: 1331 opt: 1331 Z-score: 1556.1 bits: 295.4 E(85289): 6.2e-80
Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (114-313:1-200)
90 100 110 120 130 140
pF1KE1 KKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP
::::::::::::::::::::::::::::::
NP_001 MPDPSKQPKNQLNPIGSLQELAIHHGWRLP
10 20 30
150 160 170 180 190 200
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE1 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE
100 110 120 130 140 150
270 280 290 300 310
pF1KE1 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
160 170 180 190 200
>>XP_006719644 (OMIM: 605053) PREDICTED: RISC-loading co (267 aa)
initn: 658 init1: 320 opt: 329 Z-score: 389.2 bits: 80.0 E(85289): 6.1e-15
Smith-Waterman score: 619; 45.5% identity (68.7% similar) in 246 aa overlap (91-313:28-267)
70 80 90 100 110 120
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ
:: :: . :. .. :. .: .
XP_006 MLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPV----PSVVLTRSPPMELQPPVS
10 20 30 40 50
130 140 150 160 170
pF1KE1 PK-NQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQ
:. .. ::.:.::::....::::::::..::.::::..:.: ::.: :.: :.:.:::
XP_006 PQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKL
60 70 80 90 100 110
180 190 200 210 220
pF1KE1 AKRNAAEKFLAKF----------SNISPEN-HISLTNVVGHSL--------GCTWHSLRN
:::::: :.: . ... :.. :.:. :: : :::: ::::
XP_006 AKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIG--VGSRLDGLRNRGPGCTWDSLRN
120 130 140 150 160 170
230 240 250 260 270
pF1KE1 SPGEKINLLKR-SLLSIPNTDYI--QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELS
: :::: :. :: :. ..:::...::.:...::::.::: .: :::.:::
XP_006 SVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELS
180 190 200 210 220 230
280 290 300 310
pF1KE1 TSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK
:.: ::::::. . :...::. :::::::.: :
XP_006 TQPATVCHGSATTREAARGEAARRALQYLKIMAGSK
240 250 260
>>XP_005269171 (OMIM: 605053) PREDICTED: RISC-loading co (345 aa)
initn: 925 init1: 320 opt: 329 Z-score: 387.5 bits: 80.0 E(85289): 7.6e-15
Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (26-313:1-345)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
:..:.::::::..:.::: . . :::. ... :
XP_005 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ
10 20 30
70 80 90 100 110
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL--
: :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : ::
XP_005 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS
40 50 60 70 80 90
120 130 140
pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP
.:. :: ..: .: ::.:.::::....:::::
XP_005 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP
100 110 120 130 140 150
150 160 170 180 190
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S
:::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . .
XP_005 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN
160 170 180 190 200 210
200 210 220 230 240
pF1KE1 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q
.. :.. :.: : .. ... :::: ::::: :::: :. :: :. .
XP_005 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR
220 230 240 250 260 270
250 260 270 280 290 300
pF1KE1 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL
.:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. ::
XP_005 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL
280 290 300 310 320 330
310
pF1KE1 QYLKIIAERK
:::::.: :
XP_005 QYLKIMAGSK
340
>>NP_599151 (OMIM: 605053) RISC-loading complex subunit (345 aa)
initn: 925 init1: 320 opt: 329 Z-score: 387.5 bits: 80.0 E(85289): 7.6e-15
Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (26-313:1-345)
10 20 30 40 50 60
pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
:..:.::::::..:.::: . . :::. ... :
NP_599 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ
10 20 30
70 80 90 100 110
pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL--
: :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : ::
NP_599 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS
40 50 60 70 80 90
120 130 140
pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP
.:. :: ..: .: ::.:.::::....:::::
NP_599 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP
100 110 120 130 140 150
150 160 170 180 190
pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S
:::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . .
NP_599 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN
160 170 180 190 200 210
200 210 220 230 240
pF1KE1 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q
.. :.. :.: : .. ... :::: ::::: :::: :. :: :. .
NP_599 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR
220 230 240 250 260 270
250 260 270 280 290 300
pF1KE1 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL
.:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. ::
NP_599 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL
280 290 300 310 320 330
310
pF1KE1 QYLKIIAERK
:::::.: :
NP_599 QYLKIMAGSK
340
313 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:11:16 2016 done: Sun Nov 6 18:11:17 2016
Total Scan time: 7.210 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]