FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1792, 304 aa
  1>>>pF1KE1792 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3356+/-0.000758; mu= 15.5735+/- 0.046
 mean_var=65.9263+/-13.216, 0's: 0 Z-trim(107.9): 33  B-trim: 0 in 0/53
 Lambda= 0.157959
 statistics sampled from 9811 (9843) to 9811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS2294.1 TFPI gene_id:7035|Hs108|chr2            ( 304) 2143 496.9 7.8e-141
CCDS33349.1 TFPI gene_id:7035|Hs108|chr2           ( 251) 1471 343.7 8.3e-95
CCDS5632.1 TFPI2 gene_id:7980|Hs108|chr7           ( 235)  267 69.3 3.1e-12


>>CCDS2294.1 TFPI gene_id:7035|Hs108|chr2                 (304 aa)
 initn: 2143 init1: 2143 opt: 2143  Z-score: 2641.9  bits: 496.9 E(32554): 7.8e-141
Smith-Waterman score: 2143; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE1 MIYTMKKVHALWASVCLLLNLAPAPLNADSEEDEEHTIITDTELPPLKLMHSFCAFKADD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MIYTMKKVHALWASVCLLLNLAPAPLNADSEEDEEHTIITDTELPPLKLMHSFCAFKADD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRIIKTTLQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRIIKTTLQQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDGPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDGPN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GFQVDNYGTQLNAVNNSLTPQSTKVPSLFEFHGPSWCLTPADRGLCRANENRFYYNSVIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GFQVDNYGTQLNAVNNSLTPQSTKVPSLFEFHGPSWCLTPADRGLCRANENRFYYNSVIG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KCRPFKYSGCGGNENNFTSKQECLRACKKGFIQRISKGGLIKTKRKRKKQRVKIAYEEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KCRPFKYSGCGGNENNFTSKQECLRACKKGFIQRISKGGLIKTKRKRKKQRVKIAYEEIF
              250       260       270       280       290       300

           
pF1KE1 VKNM
       ::::
CCDS22 VKNM
           

>>CCDS33349.1 TFPI gene_id:7035|Hs108|chr2                (251 aa)
 initn: 1471 init1: 1471 opt: 1471  Z-score: 1815.5  bits: 343.7 E(32554): 8.3e-95
Smith-Waterman score: 1471; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KE1 MIYTMKKVHALWASVCLLLNLAPAPLNADSEEDEEHTIITDTELPPLKLMHSFCAFKADD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MIYTMKKVHALWASVCLLLNLAPAPLNADSEEDEEHTIITDTELPPLKLMHSFCAFKADD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRIIKTTLQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRIIKTTLQQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDGPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICEDGPN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GFQVDNYGTQLNAVNNSLTPQSTKVPSLFEFHGPSWCLTPADRGLCRANENRFYYNSVIG
       :::::::::::::::::::::::::::::                               
CCDS33 GFQVDNYGTQLNAVNNSLTPQSTKVPSLFVTKEGTNDGWKNAAHIYQVFLNAFCIHASMF
              190       200       210       220       230       240

>>CCDS5632.1 TFPI2 gene_id:7980|Hs108|chr7                (235 aa)
 initn: 702 init1: 258 opt: 267  Z-score: 333.1  bits: 69.3 E(32554): 3.1e-12
Smith-Waterman score: 478; 32.4% identity (52.3% similar) in 256 aa overlap (41-290:23-234)

               20        30        40        50        60        70
pF1KE1 LWASVCLLLNLAPAPLNADSEEDEEHTIITDTELPPLKLMHSFCAFKADDGPCKAIMKRF
                                     :.   :      .: .  : :::.:.. :.
CCDS56         MDPARPLGLSILLLFLTEAALGDAAQEPTGNNAEICLLPLDYGPCRALLLRY
                       10        20        30        40        50  

               80        90       100       110       120       130
pF1KE1 FFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRIIKTTLQQEKPDFCFLEED
       ... .:..:..:.::::::: : : . : :   : :            .. :  : :. .
CCDS56 YYDRYTQSCRQFLYGGCEGNANNFYTWEACDDACWR-----------IEKVPKVCRLQVS
             60        70        80                   90       100 

               140       150       160         170       180       
pF1KE1 -PGICRGYITRYFYNNQTKQCERFKYGGCLGNM--NNFETLEECKNICEDGPNGFQVDNY
           :.:   .::.: ..  ::.:  :::  :   : :     : ..:            
CCDS56 VDDQCEGSTEKYFFNLSSMTCEKFFSGGCHRNRIENRFPDEATCMGFC------------
             110       120       130       140                     

       190       200       210       220       230       240       
pF1KE1 GTQLNAVNNSLTPQSTKVPSLFEFHGPSWCLTPADRGLCRANENRFYYNSVIGKCRPFKY
                  .:.  :.::.        : .: :.::: :: .:.:.:     :  : :
CCDS56 -----------APK--KIPSF--------CYSPKDEGLCSANVTRYYFNPRYRTCDAFTY
                150                 160       170       180        

       250       260       270         280        290       300    
pF1KE1 SGCGGNENNFTSKQECLRACKKGFIQR--ISKGGLIKTKRK-RKKQRVKIAYEEIFVKNM
       .:::::.:::.:...: ::: :.. ..  . :  . .  :: ::::              
CCDS56 TGCGGNDNNFVSREDCKRACAKALKKKKKMPKLRFASRIRKIRKKQF             
      190       200       210       220       230                  




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:28:25 2016 done: Sun Nov  6 21:28:26 2016
 Total Scan time:  1.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]