FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1791, 303 aa
  1>>>pF1KE1791 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7232+/-0.00066; mu= 15.0185+/- 0.040
 mean_var=86.9380+/-17.238, 0's: 0 Z-trim(112.6): 35  B-trim: 0 in 0/51
 Lambda= 0.137553
 statistics sampled from 13338 (13368) to 13338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.411), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS5691.1 PILRA gene_id:29992|Hs108|chr7          ( 303) 2018 409.6 1.5e-114
CCDS43622.1 PILRB gene_id:29990|Hs108|chr7         ( 227) 1215 250.2 1.1e-66
CCDS47660.1 PILRA gene_id:29992|Hs108|chr7         ( 175) 1051 217.5 5.7e-57
CCDS5692.1 PILRA gene_id:29992|Hs108|chr7          ( 230) 1035 214.4 6.3e-56


>>CCDS5691.1 PILRA gene_id:29992|Hs108|chr7               (303 aa)
 initn: 2018 init1: 2018 opt: 2018  Z-score: 2170.1  bits: 409.6 E(32554): 1.5e-114
Smith-Waterman score: 2018; 99.7% identity (99.7% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS56 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
              250       260       270       280       290       300

          
pF1KE1 LKA
       :::
CCDS56 LKA
          

>>CCDS43622.1 PILRB gene_id:29990|Hs108|chr7              (227 aa)
 initn: 1083 init1: 997 opt: 1215  Z-score: 1310.6  bits: 250.2 E(32554): 1.1e-66
Smith-Waterman score: 1215; 80.8% identity (90.4% similar) in 229 aa overlap (1-227:1-221)

               10        20        30        40        50        60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
       :::::::::: :: :::::::.::::::::::::::::::::::::::::::::::::::
CCDS43 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
       :: .:.:::::::::::::::::::::::::::::::::::::::.:::::::::.:.::
CCDS43 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
       :::::::::::: ::::: :::.::::.:::::::::        ::: ::::: .::::
CCDS43 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT--------TWRPSSTTTIAGLRV
              130       140       150               160       170  

              190       200       210         220       230        
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQRTKATTPAREP
       :..: .:.:::.::.::. ::.::.::  .::::.:::   ::::::..           
CCDS43 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF     
            180       190       200       210       220            

      240       250       260       270       280       290        
pF1KE1 FQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLY

>>CCDS47660.1 PILRA gene_id:29992|Hs108|chr7              (175 aa)
 initn: 1051 init1: 1051 opt: 1051  Z-score: 1136.3  bits: 217.5 E(32554): 5.7e-57
Smith-Waterman score: 1051; 96.2% identity (97.5% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS47 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
       :::::::::::::::::::::::::::::::.  . :::                     
CCDS47 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS     
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ

>>CCDS5692.1 PILRA gene_id:29992|Hs108|chr7               (230 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1117.5  bits: 214.4 E(32554): 6.3e-56
Smith-Waterman score: 1402; 75.6% identity (75.6% similar) in 303 aa overlap (1-303:1-230)

               10        20        30        40        50        60
pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS56 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
       :::::::::::::::::::::::::::::::                             
CCDS56 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ-----------------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
                                                   ::::::::::::::::
CCDS56 --------------------------------------------GQQRTKATTPAREPFQ
                                                         160       

              250       260       270       280       290       300
pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
       170       180       190       200       210       220       

          
pF1KE1 LKA
       :::
CCDS56 LKA
       230




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:21:53 2016 done: Sun Nov  6 16:21:53 2016
 Total Scan time:  2.870 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]