FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1790, 297 aa
  1>>>pF1KE1790 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0578+/-0.000735; mu= 13.8556+/- 0.045
 mean_var=95.2097+/-19.183, 0's: 0 Z-trim(111.7): 11  B-trim: 98 in 1/50
 Lambda= 0.131442
 statistics sampled from 12618 (12627) to 12618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.388), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS6912.1 ENDOG gene_id:2021|Hs108|chr9           ( 297) 1990 386.8  1e-107
CCDS2680.1 EXOG gene_id:9941|Hs108|chr3            ( 368)  603 123.9 1.8e-28
CCDS46795.1 EXOG gene_id:9941|Hs108|chr3           ( 318)  544 112.6 3.8e-25


>>CCDS6912.1 ENDOG gene_id:2021|Hs108|chr9                (297 aa)
 initn: 1990 init1: 1990 opt: 1990  Z-score: 2047.3  bits: 386.8 E(32554): 1e-107
Smith-Waterman score: 1990; 99.7% identity (99.7% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE1 MRALRAGLTLALGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KE1 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK
              250       260       270       280       290       

>>CCDS2680.1 EXOG gene_id:9941|Hs108|chr3                 (368 aa)
 initn: 501 init1: 501 opt: 603  Z-score: 624.5  bits: 123.9 E(32554): 1.8e-28
Smith-Waterman score: 603; 39.1% identity (70.0% similar) in 243 aa overlap (55-292:53-293)

           30        40        50        60        70          80  
pF1KE1 RRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPGLAQLKSR--ESYV
                                     : :    . : ..:.: :.  ..:   ...
CCDS26 GAVVGAAGAGLAALQFFRSQGAEGALTGKQPDGSAEKAVLEQFGFP-LTGTEARCYTNHA
             30        40        50        60         70        80 

             90       100       110       120       130       140  
pF1KE1 LCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDSVHAYHRATNADYRGSGFDRGHL
       : ::   :   ::.:..   .. ::.::..: :. : ..     : : :: :::..:::.
CCDS26 LSYDQAKRVPRWVLEHISKSKIMGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHM
              90       100       110       120       130       140 

            150       160       170       180       190       200  
pF1KE1 AAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRSLTRSYQNVYVCTGPLFL
       : :.:...:.::: .::::::..::    :.. :: .: : : ::. ...:.: .::: :
CCDS26 APAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTL
             150       160       170       180       190       200 

            210       220       230       240          250         
pF1KE1 PRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQIE---LRTYVMPNAPVDEAIP
       :.:..:::. :.:::::...::::.:..::.. . .. . :   : ..:.::  .     
CCDS26 PQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQ
             210       220       230       240       250       260 

     260       270       280       290                             
pF1KE1 LERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK                      
       : .: : ....:. :::.: :. : :..... :                           
CCDS26 LTEFQVSLQDLEKLSGLVFFPH-LDRTSDIRNICSVDTCKLLDFQEFTLYLSTRKIEGAR
             270       280        290       300       310       320

CCDS26 SVLRLEKIMENLKNAEIEPDDYFMSRYEKKLEELKAKEQSGTQIRKPS
              330       340       350       360        

>>CCDS46795.1 EXOG gene_id:9941|Hs108|chr3                (318 aa)
 initn: 479 init1: 460 opt: 544  Z-score: 564.9  bits: 112.6 E(32554): 3.8e-25
Smith-Waterman score: 544; 40.9% identity (72.6% similar) in 208 aa overlap (88-292:40-243)

        60        70        80        90       100       110       
pF1KE1 PRGPGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFRE
                                     :..::  ..   .:.   ::.::..: :. 
CCDS46 LRGSRRFLSGFVAGAVVGAAGAGLAALQFFRSQGAEGALTGKQPD---GDADRKHCKFKP
      10        20        30        40        50           60      

       120       130       140       150       160       170       
pF1KE1 DDSVHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWN
       : ..     : : :: :::..:::.: :.:...:.::: .::::::..::    :.. ::
CCDS46 DPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWN
         70        80        90       100       110       120      

       180       190       200       210       220       230       
pF1KE1 NLEKYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEA
        .: : : ::. ...:.: .::: ::.:..:::. :.:::::...::::.:..::.. . 
CCDS46 RIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARR
        130       140       150       160       170       180      

       240          250       260       270       280       290    
pF1KE1 AGGQIE---LRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITA
       .. . :   : ..:.::  .     : .: : ....:. :::.: :. : :..... :  
CCDS46 SSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPH-LDRTSDIRNICS
        190       200       210       220       230        240     

                                                                   
pF1KE1 GSK                                                         
                                                                   
CCDS46 VDTCKLLDFQEFTLYLSTRKIEGARSVLRLEKIMENLKNAEIEPDDYFMSRYEKKLEELK
         250       260       270       280       290       300     




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:41:08 2016 done: Sun Nov  6 15:41:08 2016
 Total Scan time:  2.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]