FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1789, 296 aa
  1>>>pF1KE1789 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5255+/-0.000337; mu= 14.8586+/- 0.021
 mean_var=74.1607+/-14.667, 0's: 0 Z-trim(115.9): 9  B-trim: 458 in 1/54
 Lambda= 0.148932
 statistics sampled from 26702 (26710) to 26702 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.313), width:  16
 Scan time:  6.910

The best scores are:                                      opt bits E(85289)
NP_001736 (OMIM: 601118) calcium signal-modulating ( 296) 1926 422.8 3.9e-118
XP_011541955 (OMIM: 601118) PREDICTED: calcium sig ( 274) 1369 303.1 3.9e-82


>>NP_001736 (OMIM: 601118) calcium signal-modulating cyc  (296 aa)
 initn: 1926 init1: 1926 opt: 1926  Z-score: 2241.8  bits: 422.8 E(85289): 3.9e-118
Smith-Waterman score: 1926; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KE1 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KE1 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
              250       260       270       280       290      

>>XP_011541955 (OMIM: 601118) PREDICTED: calcium signal-  (274 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1595.5  bits: 303.1 E(85289): 3.9e-82
Smith-Waterman score: 1725; 92.6% identity (92.6% similar) in 296 aa overlap (1-296:1-274)

               10        20        30        40        50        60
pF1KE1 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MESMAVATDGGERPGVPAGSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGAEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQTKSKQQDSDKLNSLSVPSVSKRVVLGDSVSTGTTDQQGGVAEVKGTQLGDKLDSFIKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PECSSDVNLELRQRNRGDLTADSVQRGSRHGLEQYLSRFEEAMKLRKQLISEKPSQEDGN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLSIFAPFLTLQLAYMGLYKYFPKSEKKIKT
       ::::::::::::::::::::::::::::::::                      ::::::
XP_011 TTEEFDSFRIFRLVGCALLALGVRAFVCKYLS----------------------EKKIKT
              190       200       210                              

              250       260       270       280       290      
pF1KE1 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFIFCHELLDYWGSEVP
      220       230       240       250       260       270    




296 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:08:55 2016 done: Sun Nov  6 17:08:56 2016
 Total Scan time:  6.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]