Result of FASTA (omim) for
pFN21AE1786
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1786, 294 aa
1>>>pF1KE1786 294 - 294 aa - 294 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.6994+/-0.000401; mu= -11.3660+/- 0.025
mean_var=492.8460+/-100.738, 0's: 0 Z-trim(125.3): 44 B-trim: 0 in 0/58
Lambda= 0.057772
statistics sampled from 48660 (48745) to 48660 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.572), width: 16
Scan time: 8.830
The best scores are: opt bits E(85289)
NP_000335 (OMIM: 253300,253400,253550,271150,60035 ( 294) 2106 189.0 9.6e-48
NP_059107 (OMIM: 253400,601627) survival motor neu ( 294) 2106 189.0 9.6e-48
XP_016865276 (OMIM: 253400,601627) PREDICTED: surv ( 290) 2006 180.6 3.1e-45
XP_011541901 (OMIM: 253400,601627) PREDICTED: surv ( 294) 2000 180.1 4.4e-45
XP_011541898 (OMIM: 253300,253400,253550,271150,60 ( 294) 2000 180.1 4.4e-45
NP_001284644 (OMIM: 253300,253400,253550,271150,60 ( 282) 1990 179.3 7.6e-45
NP_075013 (OMIM: 253400,601627) survival motor neu ( 282) 1990 179.3 7.6e-45
XP_016865275 (OMIM: 253300,253400,253550,271150,60 ( 250) 1460 135.1 1.4e-31
NP_075015 (OMIM: 253400,601627) survival motor neu ( 250) 1460 135.1 1.4e-31
NP_075014 (OMIM: 253400,601627) survival motor neu ( 262) 1460 135.1 1.4e-31
NP_075012 (OMIM: 253300,253400,253550,271150,60035 ( 262) 1460 135.1 1.4e-31
XP_011541902 (OMIM: 253400,601627) PREDICTED: surv ( 227) 1055 101.3 1.9e-21
XP_011541899 (OMIM: 253300,253400,253550,271150,60 ( 227) 1055 101.3 1.9e-21
XP_011541903 (OMIM: 253400,601627) PREDICTED: surv ( 215) 939 91.6 1.5e-18
XP_011541905 (OMIM: 253400,601627) PREDICTED: surv ( 183) 603 63.5 3.6e-10
XP_011541904 (OMIM: 253400,601627) PREDICTED: surv ( 195) 603 63.5 3.7e-10
XP_011541900 (OMIM: 253300,253400,253550,271150,60 ( 195) 603 63.5 3.7e-10
>>NP_000335 (OMIM: 253300,253400,253550,271150,600354) s (294 aa)
initn: 2106 init1: 2106 opt: 2106 Z-score: 978.2 bits: 189.0 E(85289): 9.6e-48
Smith-Waterman score: 2106; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
250 260 270 280 290
>>NP_059107 (OMIM: 253400,601627) survival motor neuron (294 aa)
initn: 2106 init1: 2106 opt: 2106 Z-score: 978.2 bits: 189.0 E(85289): 9.6e-48
Smith-Waterman score: 2106; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
250 260 270 280 290
>>XP_016865276 (OMIM: 253400,601627) PREDICTED: survival (290 aa)
initn: 2006 init1: 2006 opt: 2006 Z-score: 933.2 bits: 180.6 E(85289): 3.1e-45
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
::::::::::::::::::::::::::::::::::::::::
XP_016 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFTVLARMVSIS
250 260 270 280 290
>>XP_011541901 (OMIM: 253400,601627) PREDICTED: survival (294 aa)
initn: 1990 init1: 1990 opt: 2000 Z-score: 930.4 bits: 180.1 E(85289): 4.4e-45
Smith-Waterman score: 2000; 97.6% identity (99.0% similar) in 288 aa overlap (1-287:1-288)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYM-GFRQNQKEGRCSHSLN
:::::::::::::::::::::::::::::::::::::: ::. ...:
XP_011 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMTGFHCVSQDGLNLLTP
250 260 270 280 290
>>XP_011541898 (OMIM: 253300,253400,253550,271150,600354 (294 aa)
initn: 1990 init1: 1990 opt: 2000 Z-score: 930.4 bits: 180.1 E(85289): 4.4e-45
Smith-Waterman score: 2000; 97.6% identity (99.0% similar) in 288 aa overlap (1-287:1-288)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYM-GFRQNQKEGRCSHSLN
:::::::::::::::::::::::::::::::::::::: ::. ...:
XP_011 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMTGFHCVSQDGLNLLTP
250 260 270 280 290
>>NP_001284644 (OMIM: 253300,253400,253550,271150,600354 (282 aa)
initn: 1990 init1: 1990 opt: 1990 Z-score: 926.1 bits: 179.3 E(85289): 7.6e-45
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
::::::::::::::::::::::::::::::::::::::
NP_001 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA
250 260 270 280
>>NP_075013 (OMIM: 253400,601627) survival motor neuron (282 aa)
initn: 1990 init1: 1990 opt: 1990 Z-score: 926.1 bits: 179.3 E(85289): 7.6e-45
Smith-Waterman score: 1990; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
190 200 210 220 230 240
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
::::::::::::::::::::::::::::::::::::::
NP_075 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA
250 260 270 280
>>XP_016865275 (OMIM: 253300,253400,253550,271150,600354 (250 aa)
initn: 1695 init1: 1432 opt: 1460 Z-score: 688.0 bits: 135.1 E(85289): 1.4e-31
Smith-Waterman score: 1635; 88.5% identity (88.5% similar) in 278 aa overlap (1-278:1-246)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
:::::::::::::::::::::::::::::
XP_016 DNIKPKSAPWNSFLPPPPPMPGPRLGPGK-------------------------------
190 200
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
:::::::::::::::::::::::::::::::::::::
XP_016 -IIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA
210 220 230 240 250
>>NP_075015 (OMIM: 253400,601627) survival motor neuron (250 aa)
initn: 1695 init1: 1432 opt: 1460 Z-score: 688.0 bits: 135.1 E(85289): 1.4e-31
Smith-Waterman score: 1635; 88.5% identity (88.5% similar) in 278 aa overlap (1-278:1-246)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
:::::::::::::::::::::::::::::
NP_075 DNIKPKSAPWNSFLPPPPPMPGPRLGPGK-------------------------------
190 200
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
:::::::::::::::::::::::::::::::::::::
NP_075 -IIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMEMLA
210 220 230 240 250
>>NP_075014 (OMIM: 253400,601627) survival motor neuron (262 aa)
initn: 1811 init1: 1432 opt: 1460 Z-score: 687.8 bits: 135.1 E(85289): 1.4e-31
Smith-Waterman score: 1751; 89.1% identity (89.1% similar) in 294 aa overlap (1-294:1-262)
10 20 30 40 50 60
pF1KE1 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDIC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 ETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 ETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 DNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGP
:::::::::::::::::::::::::::::
NP_075 DNIKPKSAPWNSFLPPPPPMPGPRLGPGK-------------------------------
190 200
250 260 270 280 290
pF1KE1 PIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 -IIPPPPPICPDSLDDADALGSMLISWYMSGYHTGYYMGFRQNQKEGRCSHSLN
210 220 230 240 250 260
294 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 11:21:25 2016 done: Sun Nov 6 11:21:27 2016
Total Scan time: 8.830 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]