FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1781, 289 aa
  1>>>pF1KE1781 289 - 289 aa - 289 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2858+/-0.000784; mu= 9.5071+/- 0.047
 mean_var=64.7662+/-13.516, 0's: 0 Z-trim(106.9): 11  B-trim: 0 in 0/51
 Lambda= 0.159368
 statistics sampled from 9258 (9260) to 9258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.284), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS9552.1 PNP gene_id:4860|Hs108|chr14            ( 289) 1953 457.7 4.6e-129
CCDS6509.1 MTAP gene_id:4507|Hs108|chr9            ( 283)  274 71.6 7.3e-13


>>CCDS9552.1 PNP gene_id:4860|Hs108|chr14                 (289 aa)
 initn: 1953 init1: 1953 opt: 1953  Z-score: 2430.5  bits: 457.7 E(32554): 4.6e-129
Smith-Waterman score: 1953; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KE1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL
              190       200       210       220       230       240

              250       260       270       280         
pF1KE1 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS
              250       260       270       280         

>>CCDS6509.1 MTAP gene_id:4507|Hs108|chr9                 (283 aa)
 initn: 181 init1: 137 opt: 274  Z-score: 344.4  bits: 71.6 E(32554): 7.3e-13
Smith-Waterman score: 274; 27.5% identity (58.8% similar) in 262 aa overlap (26-283:11-256)

               10        20        30        40        50        60
pF1KE1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST
                                ...:: :.::     .. ...   : . : : .  
CCDS65                MASGTTTTAVKIGIIGGTGLD--DPEILEGRTEKYVDTP-FGK--
                              10        20          30         40  

               70        80          90       100         110      
pF1KE1 VPGHAGRLVFGFLNGRACVMM--QGRFHMYEGYPLWKVTFPVRVFHLL--GVDTLVVTNA
        :. :  :..: ...  ::..  .:: :    .:  ::.. . .. :   :   ..::.:
CCDS65 -PSDA--LILGKIKNVDCVLLARHGRQHTI--MPS-KVNYQANIWALKEEGCTHVIVTTA
                  50        60          70         80        90    

        120       130       140       150       160       170      
pF1KE1 AGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALS
        :.:  ... :::..: . :.   .  :.   : ..   :     :.. .    :.  . 
CCDS65 CGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIE
          100       110       120       130       140       150    

        180       190       200       210       220       230      
pF1KE1 TWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVF
       : :..:  :  ..::.: . :: : . ::  ...  :::...:.:::::..:.. :.   
CCDS65 TAKKLG-LRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYA
          160        170       180       190       200       210   

        240       250       260       270       280                
pF1KE1 GFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS       
       .... :.      :  : .. ..:: . :. :.: .   :.:...::             
CCDS65 SIAMATDYDCWK-EHEEAVSVDRVLKTLKENANKAK---SLLLTTIPQIGSTEWSETLHN
           220        230       240          250       260         

CCDS65 LKNMAQFSVLLPRH
     270       280   




289 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:51:44 2016 done: Sun Nov  6 09:51:44 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]