FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1773, 280 aa
  1>>>pF1KE1773 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7826+/-0.000873; mu= 12.4183+/- 0.052
 mean_var=64.6473+/-13.517, 0's: 0 Z-trim(106.3): 17  B-trim: 443 in 1/50
 Lambda= 0.159514
 statistics sampled from 8903 (8916) to 8903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS5933.1 XRCC2 gene_id:7516|Hs108|chr7           ( 280) 1872 439.4 1.4e-123


>>CCDS5933.1 XRCC2 gene_id:7516|Hs108|chr7                (280 aa)
 initn: 1872 init1: 1872 opt: 1872  Z-score: 2332.4  bits: 439.4 E(32554): 1.4e-123
Smith-Waterman score: 1872; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KE1 MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MCSAFHRAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEEIIKYCLGRFFLVYC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASRRLCDVDIDYRPYLCKAWQQLVKHRMF
              190       200       210       220       230       240

              250       260       270       280
pF1KE1 FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC
       ::::::::::::::::::::::::::::::::::::::::
CCDS59 FSKQDDSQSSNQFSLVSRCLKSNSLKKHFFIIGESGVEFC
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:13:41 2016 done: Sun Nov  6 16:13:42 2016
 Total Scan time:  2.160 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]