FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1766, 271 aa
  1>>>pF1KE1766 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0574+/-0.000805; mu= 4.8271+/- 0.049
 mean_var=213.7884+/-44.400, 0's: 0 Z-trim(115.6): 13  B-trim: 407 in 1/52
 Lambda= 0.087717
 statistics sampled from 16124 (16134) to 16124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.496), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS13010.1 PSMF1 gene_id:9491|Hs108|chr20         ( 271) 1920 254.7 5.2e-68
CCDS82589.1 PSMF1 gene_id:9491|Hs108|chr20         ( 263) 1815 241.4 5.1e-64


>>CCDS13010.1 PSMF1 gene_id:9491|Hs108|chr20              (271 aa)
 initn: 1920 init1: 1920 opt: 1920  Z-score: 1334.4  bits: 254.7 E(32554): 5.2e-68
Smith-Waterman score: 1920; 99.6% identity (99.6% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KE1 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNN
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS13 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
              190       200       210       220       230       240

              250       260       270 
pF1KE1 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL
       :::::::::::::::::::::::::::::::
CCDS13 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL
              250       260       270 

>>CCDS82589.1 PSMF1 gene_id:9491|Hs108|chr20              (263 aa)
 initn: 1815 init1: 1815 opt: 1815  Z-score: 1262.8  bits: 241.4 E(32554): 5.1e-64
Smith-Waterman score: 1815; 99.2% identity (99.2% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE1 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPNDKKSELLPAGWNN
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS82 MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QPPWCDPLGPFVVGGEDLDPFGPRRGGMIVDPLRSGFPRALIDPSSGLPNRLPPGAVPPG
              190       200       210       220       230       240

              250       260       270 
pF1KE1 ARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL
       :::::::::::::::: ::            
CCDS82 ARFDPFGPIGTSPPGPRPDRRGQ        
              250       260           




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:10:14 2016 done: Sun Nov  6 13:10:15 2016
 Total Scan time:  2.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]