FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1765, 270 aa
  1>>>pF1KE1765 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7809+/-0.000893; mu= 12.3537+/- 0.054
 mean_var=68.2197+/-13.685, 0's: 0 Z-trim(105.1): 20  B-trim: 0 in 0/50
 Lambda= 0.155281
 statistics sampled from 8234 (8243) to 8234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS6468.1 IL33 gene_id:90865|Hs108|chr9           ( 270) 1797 411.5 3.1e-115
CCDS83341.1 IL33 gene_id:90865|Hs108|chr9          ( 228) 1044 242.8 1.6e-64
CCDS56563.1 IL33 gene_id:90865|Hs108|chr9          ( 228)  789 185.7 2.6e-47
CCDS56564.1 IL33 gene_id:90865|Hs108|chr9          ( 144)  774 182.3 1.7e-46


>>CCDS6468.1 IL33 gene_id:90865|Hs108|chr9                (270 aa)
 initn: 1797 init1: 1797 opt: 1797  Z-score: 2182.2  bits: 411.5 E(32554): 3.1e-115
Smith-Waterman score: 1797; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE1 MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RRETTKRPSLKTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSITGISPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RRETTKRPSLKTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSITGISPIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EYLASLSTYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EYLASLSTYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFI
              190       200       210       220       230       240

              250       260       270
pF1KE1 GVKDNHLALIKVDSSENLCTENILFKLSET
       ::::::::::::::::::::::::::::::
CCDS64 GVKDNHLALIKVDSSENLCTENILFKLSET
              250       260       270

>>CCDS83341.1 IL33 gene_id:90865|Hs108|chr9               (228 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1271.7  bits: 242.8 E(32554): 1.6e-64
Smith-Waterman score: 1423; 84.4% identity (84.4% similar) in 270 aa overlap (1-270:1-228)

               10        20        30        40        50        60
pF1KE1 MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RRETTKRPSLKTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSITGISPIT
       :::::::::::::                                          :::::
CCDS83 RRETTKRPSLKTG------------------------------------------ISPIT
               70                                                  

              130       140       150       160       170       180
pF1KE1 EYLASLSTYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EYLASLSTYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGK
       80        90       100       110       120       130        

              190       200       210       220       230       240
pF1KE1 MLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFI
      140       150       160       170       180       190        

              250       260       270
pF1KE1 GVKDNHLALIKVDSSENLCTENILFKLSET
       ::::::::::::::::::::::::::::::
CCDS83 GVKDNHLALIKVDSSENLCTENILFKLSET
      200       210       220        

>>CCDS56563.1 IL33 gene_id:90865|Hs108|chr9               (228 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 963.0  bits: 185.7 E(32554): 2.6e-47
Smith-Waterman score: 1444; 84.4% identity (84.4% similar) in 270 aa overlap (1-270:1-228)

               10        20        30        40        50        60
pF1KE1 MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MKPKMKYSTNKISTAKWKNTASKALCFKLGKSQQKAKEVCPMYFMKLRSGLMIKKEACYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RRETTKRPSLKTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSITGISPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS56 RRETTKRPSLKTGRKHKRHLVLAACQQQSTVECFAFGISGVQKYTRALHDSSIT------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE1 EYLASLSTYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGK
                                           ::::::::::::::::::::::::
CCDS56 ------------------------------------DKVLLSYYESQHPSNESGDGVDGK
                                              120       130        

              190       200       210       220       230       240
pF1KE1 MLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MLMVTLSPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFI
      140       150       160       170       180       190        

              250       260       270
pF1KE1 GVKDNHLALIKVDSSENLCTENILFKLSET
       ::::::::::::::::::::::::::::::
CCDS56 GVKDNHLALIKVDSSENLCTENILFKLSET
      200       210       220        

>>CCDS56564.1 IL33 gene_id:90865|Hs108|chr9               (144 aa)
 initn: 958 init1: 774 opt: 774  Z-score: 948.1  bits: 182.3 E(32554): 1.7e-46
Smith-Waterman score: 774; 99.1% identity (100.0% similar) in 114 aa overlap (157-270:31-144)

        130       140       150       160       170       180      
pF1KE1 STYNDQSITFALEDESYEIYVEDLKKDEKKDKVLLSYYESQHPSNESGDGVDGKMLMVTL
                                     .:::::::::::::::::::::::::::::
CCDS56 MKPKMKYSTNKISTAKWKNTASKALCFKLGNKVLLSYYESQHPSNESGDGVDGKMLMVTL
               10        20        30        40        50        60

        190       200       210       220       230       240      
pF1KE1 SPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFIGVKDNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SPTKDFWLHANNKEHSVELHKCEKPLPDQAFFVLHNMHSNCVSFECKTDPGVFIGVKDNH
               70        80        90       100       110       120

        250       260       270
pF1KE1 LALIKVDSSENLCTENILFKLSET
       ::::::::::::::::::::::::
CCDS56 LALIKVDSSENLCTENILFKLSET
              130       140    




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:51:46 2016 done: Sun Nov  6 15:51:46 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]