FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1763, 269 aa
  1>>>pF1KE1763 269 - 269 aa - 269 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3492+/-0.000291; mu= 15.6954+/- 0.018
 mean_var=77.6520+/-15.844, 0's: 0 Z-trim(118.1): 9  B-trim: 0 in 0/54
 Lambda= 0.145545
 statistics sampled from 30670 (30677) to 30670 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.36), width:  16
 Scan time:  7.370

The best scores are:                                      opt bits E(85289)
NP_620279 (OMIM: 601240,612736) guanidinoacetate N ( 269) 1907 409.3 3.8e-114
NP_000147 (OMIM: 601240,612736) guanidinoacetate N ( 236) 1334 288.9 5.7e-78


>>NP_620279 (OMIM: 601240,612736) guanidinoacetate N-met  (269 aa)
 initn: 1907 init1: 1907 opt: 1907  Z-score: 2170.3  bits: 409.3 E(85289): 3.8e-114
Smith-Waterman score: 1907; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KE1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
              190       200       210       220       230       240

              250       260         
pF1KE1 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA
       :::::::::::::::::::::::::::::
NP_620 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA
              250       260         

>>NP_000147 (OMIM: 601240,612736) guanidinoacetate N-met  (236 aa)
 initn: 1333 init1: 1333 opt: 1334  Z-score: 1520.8  bits: 288.9 E(85289): 5.7e-78
Smith-Waterman score: 1334; 97.5% identity (98.0% similar) in 197 aa overlap (1-197:1-195)

               10        20        30        40        50        60
pF1KE1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
       ::::::::::    .::                                           
NP_000 KYSDITIMFE--ETQVPALLEAGFRRENIRTEVMALVPPADCRYYAFPQMITPLVTKG  
              190         200       210       220       230        




269 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:36:22 2016 done: Sun Nov  6 13:36:23 2016
 Total Scan time:  7.370 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]