FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1763, 269 aa
  1>>>pF1KE1763 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3790+/-0.000673; mu= 15.4326+/- 0.041
 mean_var=71.6770+/-14.511, 0's: 0 Z-trim(110.9): 10  B-trim: 0 in 0/51
 Lambda= 0.151490
 statistics sampled from 11933 (11937) to 11933 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS45897.1 GAMT gene_id:2593|Hs108|chr19          ( 269) 1907 425.3 2.3e-119
CCDS12064.1 GAMT gene_id:2593|Hs108|chr19          ( 236) 1334 300.0   1e-81


>>CCDS45897.1 GAMT gene_id:2593|Hs108|chr19               (269 aa)
 initn: 1907 init1: 1907 opt: 1907  Z-score: 2256.5  bits: 425.3 E(32554): 2.3e-119
Smith-Waterman score: 1907; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KE1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
              190       200       210       220       230       240

              250       260         
pF1KE1 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA
       :::::::::::::::::::::::::::::
CCDS45 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA
              250       260         

>>CCDS12064.1 GAMT gene_id:2593|Hs108|chr19               (236 aa)
 initn: 1333 init1: 1333 opt: 1334  Z-score: 1580.6  bits: 300.0 E(32554): 1e-81
Smith-Waterman score: 1334; 97.5% identity (98.0% similar) in 197 aa overlap (1-197:1-195)

               10        20        30        40        50        60
pF1KE1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
       ::::::::::    .::                                           
CCDS12 KYSDITIMFE--ETQVPALLEAGFRRENIRTEVMALVPPADCRYYAFPQMITPLVTKG  
              190         200       210       220       230        




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:36:22 2016 done: Sun Nov  6 13:36:22 2016
 Total Scan time:  2.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]