FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1755, 261 aa
  1>>>pF1KE1755 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3724+/-0.00069; mu= 14.9093+/- 0.042
 mean_var=70.3801+/-13.677, 0's: 0 Z-trim(110.8): 9  B-trim: 0 in 0/50
 Lambda= 0.152880
 statistics sampled from 11883 (11889) to 11883 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS31897.1 ALKBH2 gene_id:121642|Hs108|chr12      ( 261) 1784 401.9 2.2e-112
CCDS55883.1 ALKBH2 gene_id:121642|Hs108|chr12      ( 157)  653 152.4 1.8e-37
CCDS7906.1 ALKBH3 gene_id:221120|Hs108|chr11       ( 286)  377 91.6 6.3e-19


>>CCDS31897.1 ALKBH2 gene_id:121642|Hs108|chr12           (261 aa)
 initn: 1784 init1: 1784 opt: 1784  Z-score: 2131.0  bits: 401.9 E(32554): 2.2e-112
Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPV
              190       200       210       220       230       240

              250       260 
pF1KE1 RKKVLAPRVNLTFRKILLTKK
       :::::::::::::::::::::
CCDS31 RKKVLAPRVNLTFRKILLTKK
              250       260 

>>CCDS55883.1 ALKBH2 gene_id:121642|Hs108|chr12           (157 aa)
 initn: 653 init1: 653 opt: 653  Z-score: 786.1  bits: 152.4 E(32554): 1.8e-37
Smith-Waterman score: 653; 75.2% identity (82.5% similar) in 137 aa overlap (1-137:1-137)

               10        20        30        40        50        60
pF1KE1 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGL
       ::::::::::::::::::::::::::::::::::    : . :. . . ..    .   :
CCDS55 RAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGIKMAVTTSGSTEMMKENWPLGAPLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAP
       . .  . :::    :::                                           
CCDS55 SPSVPAETLSSGIRIPVGKAPPGGWRWSGCRWPTGAY                       
              130       140       150                              

>>CCDS7906.1 ALKBH3 gene_id:221120|Hs108|chr11            (286 aa)
 initn: 339 init1: 163 opt: 377  Z-score: 453.2  bits: 91.6 E(32554): 6.3e-19
Smith-Waterman score: 377; 37.0% identity (60.9% similar) in 192 aa overlap (67-256:91-277)

         40        50        60        70        80        90      
pF1KE1 TRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGAL
                                     : :  .    ::: :...: ..: .   . 
CCDS79 QVVRRAPEPRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTG
               70        80        90       100       110       120

        100       110       120       130        140       150     
pF1KE1 ARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKP-WIPVLERIRDHVSGVTGQTFNF
        : ..    .. ::  : ::.  : ::.: .:. :.: : :::. .....   ::.::: 
CCDS79 IREDIT---YQQPRLTAWYGE--LPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNS
                 130         140       150       160       170     

         160       170       180       190       200       210     
pF1KE1 VLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRR-VAVV
       .: : :..  : .  : :::  :.    :::.:::: : : .:.:    .. .   :  :
CCDS79 LLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERV
         180       190       200       210       220       230     

          220       230       240       250       260     
pF1KE1 RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK    
       ..:: ::.::.:.  :.. : : .: . .   :::::::: .         
CCDS79 KIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW
         240       250       260       270       280      




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:27:17 2016 done: Sun Nov  6 12:27:17 2016
 Total Scan time:  2.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]