FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1754, 131 aa
  1>>>pF1KE1754 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6881+/-0.000532; mu= 12.6796+/- 0.032
 mean_var=110.0968+/-21.645, 0's: 0 Z-trim(118.1): 5  B-trim: 0 in 0/54
 Lambda= 0.122233
 statistics sampled from 18973 (18978) to 18973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.879), E-opt: 0.2 (0.583), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS46130.1 BBC3 gene_id:27113|Hs108|chr19         ( 131)  938 174.0 2.4e-44
CCDS12697.1 BBC3 gene_id:27113|Hs108|chr19         ( 193)  714 134.6 2.4e-32


>>CCDS46130.1 BBC3 gene_id:27113|Hs108|chr19              (131 aa)
 initn: 938 init1: 938 opt: 938  Z-score: 909.6  bits: 174.0 E(32554): 2.4e-44
Smith-Waterman score: 938; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KE1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 APGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 APGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLP
               70        80        90       100       110       120

              130 
pF1KE1 RGHRAPEMEPN
       :::::::::::
CCDS46 RGHRAPEMEPN
              130 

>>CCDS12697.1 BBC3 gene_id:27113|Hs108|chr19              (193 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 694.1  bits: 134.6 E(32554): 2.4e-32
Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 102 aa overlap (30-131:92-193)

                10        20        30        40        50         
pF1KE1  MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQ
                                     ::::::::::::::::::::::::::::::
CCDS12 PTAPPAVTAALGGSRWPGGPRSRPRGPRPDGPQPSLSLAEQHLESPVPSAPGALAGGPTQ
              70        80        90       100       110       120 

      60        70        80        90       100       110         
pF1KE1 AAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPL
             130       140       150       160       170       180 

     120       130 
pF1KE1 PRGHRAPEMEPN
       ::::::::::::
CCDS12 PRGHRAPEMEPN
             190   




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:19:05 2016 done: Sun Nov  6 13:19:05 2016
 Total Scan time:  1.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]