FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1751, 254 aa
  1>>>pF1KE1751 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9094+/-0.000583; mu= 18.3633+/- 0.035
 mean_var=76.6684+/-15.217, 0's: 0 Z-trim(114.0): 5  B-trim: 0 in 0/54
 Lambda= 0.146476
 statistics sampled from 14619 (14623) to 14619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS12169.1 TNFSF9 gene_id:8744|Hs108|chr19        ( 254) 1681 363.6 7.5e-101


>>CCDS12169.1 TNFSF9 gene_id:8744|Hs108|chr19             (254 aa)
 initn: 1681 init1: 1681 opt: 1681  Z-score: 1924.0  bits: 363.6 E(32554): 7.5e-101
Smith-Waterman score: 1681; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KE1 MEYASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEYASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SPGSAASPRLREGPELSPDDPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPGSAASPRLREGPELSPDDPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRV
              190       200       210       220       230       240

              250    
pF1KE1 TPEIPAGLPSPRSE
       ::::::::::::::
CCDS12 TPEIPAGLPSPRSE
              250    




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:30:16 2016 done: Sun Nov  6 13:30:17 2016
 Total Scan time:  2.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]